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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PSME_00038546-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family |
NAC |
| Protein Properties |
Length: 296aa MW: 33434.5 Da PI: 6.8689 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00038546-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 174.8 | 2.5e-54 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lppGfrFhPtdeelvv+yLkkk+++++l++ ++i+e+d+yk++PwdLp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l
PSME_00038546-RA 15 LPPGFRFHPTDEELVVHYLKKKASSSPLPV-SIIAEIDLYKFDPWDLPGKTSYGEHEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPIL 106
79****************************.89***************8888899*************************************9 PP
NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
++ +++++g+kk Lvfy+gr pkg ktdW+mheyrl
PSME_00038546-RA 107 TSaGRQKIGVKKALVFYSGRPPKGIKTDWIMHEYRL 142
9978889***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
GIALGWDYVI GVMELPPGFR FHPTDEELVV HYLKKKASSS PLPVSIIAEI DLYKFDPWDL 60
PGKTSYGEHE WYFFSPRDRK YPNGARPNRA AASGYWKATG TDKPILTSAG RQKIGVKKAL 120
VFYSGRPPKG IKTDWIMHEY RLAEGISKPS SLASRKGSLR LDDWVLCRIY KKSRHSPRMA 180
ESEKDESHVE EGSSSLPDIH HDQRLQLQKR GPFSSLLASA VDVLDESLID VESSQETGYQ 240
GDPLFPSDSR NENISNNNDS NNDPTILNTL QPQAFHEEKL LGTMGDFRQI YQSHFP
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 1e-73 | 13 | 172 | 18 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 1e-73 | 13 | 172 | 18 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 1e-73 | 13 | 172 | 18 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 1e-73 | 13 | 172 | 18 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 1e-73 | 13 | 172 | 18 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 1e-73 | 13 | 172 | 18 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 1e-73 | 13 | 172 | 18 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 1e-73 | 13 | 172 | 18 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
