PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

PSME_00038483-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 330aa MW: 35999.4 Da PI: 8.4581

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00038483-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	4.8e-09	197	245	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq PSME_00038483-RA 197 NSHILAERVRREKISERMKFLQDLVPGC----SKATGKAVMLDEIINYVQSLQ 245 58999********************9....7779**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.57E-9	192	245	No hit	No description
SuperFamily	SSF47459	2.49E-17	192	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.186	194	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-16	195	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-6	197	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-8	200	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
AERAARLSCF GVGGGSLNLS ESSGAPFHRS VIDNSAMSRI PRPNMAELTK VSDTSLSKEE 60 VCAAETGVRK AGRLSRSSTP GHGTSGNESD DAENTSEAAP NAFNGRKRKQ MQKDKGKDFA 120 SLQAEKETQA VDGLKGMKYK TVEGVKEKDD VKYKVEQNAS AKTGEGSPKQ AKDNIQTSEP 180 PKEDYIHVRA RRGQATNSHI LAERVRREKI SERMKFLQDL VPGCSKATGK AVMLDEIINY 240 VQSLQWQVEF LSMKLAAVNP RMEFNVEGIL AKDMLQSQGS SPTMVFASDT STSYPQLHQP 300 QQGLVQIGTE GHGILSHVWD NELQSVVQMG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT113151	0.0	BT113151.1 Picea glauca clone GQ03326_F21 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006848450.1	6e-85	transcription factor bHLH78
Refseq	XP_010654187.1	6e-85	PREDICTED: transcription factor bHLH49 isoform X1
Refseq	XP_010654195.1	6e-85	PREDICTED: transcription factor bHLH49 isoform X1
Refseq	XP_010654202.1	6e-85	PREDICTED: transcription factor bHLH49 isoform X1
Refseq	XP_010654208.1	6e-85	PREDICTED: transcription factor bHLH49 isoform X1
Refseq	XP_019076890.1	6e-85	PREDICTED: transcription factor bHLH49 isoform X1
Swissprot	Q9CAA9	5e-61	BH049_ARATH; Transcription factor bHLH49
TrEMBL	B8LLM2	1e-105	B8LLM2_PICSI; Uncharacterized protein
STRING	ERN10031	2e-84	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	6e-63	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]