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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PSME_00037950-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
| Family |
NAC |
| Protein Properties |
Length: 287aa MW: 32883.1 Da PI: 6.7216 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00037950-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 135.8 | 2.8e-42 | 20 | 146 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
pGfrF Pt+eelv +yLkk+v+g + l+++ +++++d+y+++PwdLp + + +e++w+fF++r+ k+ r++r t sgyWk+tg+d+++
PSME_00037950-RA 20 IPGFRFYPTEEELVGFYLKKRVQGGHqLNFDLIMPTLDLYRYDPWDLPgLANDVGERQWFFFVPREYKK--CARPTRLTVSGYWKTTGSDRAI 110
69*********************99945554459999***********555566999*******97765..68******************** PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ + +glkktLvfykg+ap g++tdW+m+eyr+
PSME_00037950-RA 111 RNDLLQCIGLKKTLVFYKGKAPLGQRTDWIMNEYRM 146
**99999***************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 287 aa
Download sequence Send
to blast |
MDTVEEMYSE GAVQAELPVI PGFRFYPTEE ELVGFYLKKR VQGGHQLNFD LIMPTLDLYR 60
YDPWDLPGLA NDVGERQWFF FVPREYKKCA RPTRLTVSGY WKTTGSDRAI RNDLLQCIGL 120
KKTLVFYKGK APLGQRTDWI MNEYRMPDLR SSSPKECKLA CADQEDGYGG MSDIYKGGFS 180
QVDGTTNQRD RIEKGKLVVS AGDEYEQKCH SINCQSNPTT EATVCRLHYN ENQNVVFYSN 240
VTKRDNVSKR DNEARQFENQ KGSVCSNVSK MSNQACQFEC LGPMMFC
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-36 | 15 | 155 | 13 | 153 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-36 | 15 | 155 | 13 | 153 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-36 | 15 | 155 | 13 | 153 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-36 | 15 | 155 | 13 | 153 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 3e-36 | 15 | 155 | 13 | 153 | NAC domain-containing protein 19 |
| 4dul_B | 3e-36 | 15 | 155 | 13 | 153 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
