PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

PSME_00037798-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 325aa MW: 35305.3 Da PI: 9.2233

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00037798-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.2	7.9e-10	149	194	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er+ R+ri +++ L+el+P + K +Ka++L + ++Y++ Lq PSME_00037798-RA 149 HSIAERQHRERIAERMKALQELVPIC-----NKTDKAAMLDEIIDYVRFLQ 194 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.09E-15	143	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.488	144	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-15	147	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.09E-11	148	198	No hit	No description
Pfam	PF00010	3.0E-7	149	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-11	150	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MMTGILEDPF LASRLQQQLS NENLLGSYPW HYSWAHQGDA SLSYLLAGTV IRSPLSGSAV 60 AAAVVDTITI QSPTQSWQPP YVGLNPLSLG QGRVDTARLL GKRLRDDQAR PTNTRLLRLQ 120 PQSLSPPGAV AAPARPQARA RHGQATDPHS IAERQHRERI AERMKALQEL VPICNKTDKA 180 AMLDEIIDYV RFLQLQVKVL SMSRLGGAGA GGPLVVDISA DASNSMRLSR IKKGHENICR 240 DDEGLLITEE EVAKLMDENM GSAMQYLQTK GLCLIPLSIA TTICGRSTMQ PNALVRSPSP 300 CASNRVINST HPASESKSRS KEGTT

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024394844.1	3e-64	transcription factor bHLH85-like isoform X2
Swissprot	Q9LSQ3	2e-59	BH082_ARATH; Transcription factor bHLH82
TrEMBL	A0A2K1JI03	7e-63	A0A2K1JI03_PHYPA; Uncharacterized protein
STRING	PP1S209_22V6.2	1e-63	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-51	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tam TH,Catarino B,Dolan L Conserved regulatory mechanism controls the development of cells with rooting functions in land plants. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68 [PMID:26150509] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]