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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00037533-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | ERF | ||||||||
Protein Properties | Length: 452aa MW: 51578.5 Da PI: 8.178 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.7e-19 | 165 | 215 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa a+++a++k++g+ PSME_00037533-RA 165 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAGAYDNAALKFRGA 215 7********.**********94....45*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.5E-32 | 165 | 223 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.52E-34 | 165 | 223 | No hit | No description |
SMART | SM00380 | 8.1E-36 | 165 | 228 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.106 | 165 | 222 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 165 | 214 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.15E-22 | 165 | 223 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.2E-11 | 166 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-11 | 188 | 204 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MPAKVVVNTT RRISRLRLGF NRGFPVWYVA DARRLYLLLK FPFIFYLRTM QPDIANEEKN 60 MSEVNFVDNS EDTLAMISAL SRVVCEYKLN LMDGKTDQLV AGKKRRRDEQ QTITSTAPCV 120 KEDENSEVSS IVTPLHHQQR NQEDDMSSNK KDEPPETQNS GKKRRYRGVR QRPWGKWAAE 180 IRDPKKAARV WLGTFDTAED AAGAYDNAAL KFRGARAKLN FPERINLRDD DDPGMKIAKQ 240 ESDAITDFSR QVAHATSNVC LPAYLNDLSA PTRAPFRNAV HHGNAAQNFI PTDSTRLLQV 300 SDLYRYAQLL QSQRFDAHQV NCYPTLLDQY SAYMKYQQQT EAYNRQLASI TPIQNHPGLN 360 DIPQVQITGR PNLASAKYTG TTLPMYNNYV QQQQQQPSNS TTGYDSEQYN LDLDQTSRSL 420 LASTVESQSN SYDDSDYNSV LLARHNWHCP DL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-26 | 161 | 226 | 1 | 67 | ATERF1 |
3gcc_A | 5e-26 | 161 | 226 | 1 | 67 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9P288 | 1e-154 | A9P288_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 8e-29 | ERF family protein |