PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037533-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 452aa    MW: 51578.5 Da    PI: 8.178
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037533-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19165215256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a++k++g+
  PSME_00037533-RA 165 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAGAYDNAALKFRGA 215
                       7********.**********94....45*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-32165223IPR001471AP2/ERF domain
CDDcd000184.52E-34165223No hitNo description
SMARTSM003808.1E-36165228IPR001471AP2/ERF domain
PROSITE profilePS5103225.106165222IPR001471AP2/ERF domain
PfamPF008471.4E-12165214IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-22165223IPR016177DNA-binding domain
PRINTSPR003674.2E-11166177IPR001471AP2/ERF domain
PRINTSPR003674.2E-11188204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MPAKVVVNTT RRISRLRLGF NRGFPVWYVA DARRLYLLLK FPFIFYLRTM QPDIANEEKN  60
MSEVNFVDNS EDTLAMISAL SRVVCEYKLN LMDGKTDQLV AGKKRRRDEQ QTITSTAPCV  120
KEDENSEVSS IVTPLHHQQR NQEDDMSSNK KDEPPETQNS GKKRRYRGVR QRPWGKWAAE  180
IRDPKKAARV WLGTFDTAED AAGAYDNAAL KFRGARAKLN FPERINLRDD DDPGMKIAKQ  240
ESDAITDFSR QVAHATSNVC LPAYLNDLSA PTRAPFRNAV HHGNAAQNFI PTDSTRLLQV  300
SDLYRYAQLL QSQRFDAHQV NCYPTLLDQY SAYMKYQQQT EAYNRQLASI TPIQNHPGLN  360
DIPQVQITGR PNLASAKYTG TTLPMYNNYV QQQQQQPSNS TTGYDSEQYN LDLDQTSRSL  420
LASTVESQSN SYDDSDYNSV LLARHNWHCP DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-26161226167ATERF1
3gcc_A5e-26161226167ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P2881e-154A9P288_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.18e-29ERF family protein