![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00037532-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 434aa MW: 49347.4 Da PI: 6.6336 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.1e-19 | 105 | 154 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa a+++a +k++g PSME_00037532-RA 105 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDNASLKFRG 154 7********.**********94....45************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.2E-35 | 105 | 168 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-32 | 105 | 163 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-12 | 105 | 154 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.777 | 105 | 162 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.75E-34 | 105 | 163 | No hit | No description |
SuperFamily | SSF54171 | 3.66E-22 | 105 | 163 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.3E-11 | 106 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 128 | 144 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 434 aa Download sequence Send to blast |
MSEDNFVENS EDTLAMISAL SRVVCGYKLD RMDGKTDQLV AGKKRRGDEQ QTITSTAPCV 60 KEDDISEVSS IVTPLHHQQR IQEDDMSSNK KDELPETQNS GKKRRYRGVR QRPWGKWAAE 120 IRDPKKAARV WLGTFDTAED AAIAYDNASL KFRGARAKLN FPERINLPDE DHLGMNIAKQ 180 ESDAITDFSR QISHATSKAW LPAYRNNLSA PTHAPYPNAV HHGNPAQHFI PTDSTGSSRV 240 PDLYRYAQLV QNQGFDANQV NSYPTLLEHY SRLSQVSDLY RYAQLLRNQG FDADQANSYP 300 TLLEHYSAYM KYQQQTEANN RQLASITPIQ NQPGLNYIRQ VQITGRPNLA STNYTGTTLP 360 MYNNYVQQQQ HMLIHQQQPS NSTTGYDSEL YNLDLDQKSR RLLASTVESQ SNSYDDSDYN 420 QVLLTGHNWH IPDP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-27 | 101 | 166 | 1 | 67 | ATERF1 |
3gcc_A | 7e-27 | 101 | 166 | 1 | 67 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A9P288 | 1e-151 | A9P288_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13330.1 | 2e-35 | related to AP2 6l |