PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037532-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 434aa    MW: 49347.4 Da    PI: 6.6336
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037532-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19105154255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a +k++g
  PSME_00037532-RA 105 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDNASLKFRG 154
                       7********.**********94....45************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.2E-35105168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-32105163IPR001471AP2/ERF domain
PfamPF008471.6E-12105154IPR001471AP2/ERF domain
PROSITE profilePS5103224.777105162IPR001471AP2/ERF domain
CDDcd000181.75E-34105163No hitNo description
SuperFamilySSF541713.66E-22105163IPR016177DNA-binding domain
PRINTSPR003672.3E-11106117IPR001471AP2/ERF domain
PRINTSPR003672.3E-11128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MSEDNFVENS EDTLAMISAL SRVVCGYKLD RMDGKTDQLV AGKKRRGDEQ QTITSTAPCV  60
KEDDISEVSS IVTPLHHQQR IQEDDMSSNK KDELPETQNS GKKRRYRGVR QRPWGKWAAE  120
IRDPKKAARV WLGTFDTAED AAIAYDNASL KFRGARAKLN FPERINLPDE DHLGMNIAKQ  180
ESDAITDFSR QISHATSKAW LPAYRNNLSA PTHAPYPNAV HHGNPAQHFI PTDSTGSSRV  240
PDLYRYAQLV QNQGFDANQV NSYPTLLEHY SRLSQVSDLY RYAQLLRNQG FDADQANSYP  300
TLLEHYSAYM KYQQQTEANN RQLASITPIQ NQPGLNYIRQ VQITGRPNLA STNYTGTTLP  360
MYNNYVQQQQ HMLIHQQQPS NSTTGYDSEL YNLDLDQKSR RLLASTVESQ SNSYDDSDYN  420
QVLLTGHNWH IPDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-27101166167ATERF1
3gcc_A7e-27101166167ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P2881e-151A9P288_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-35related to AP2 6l