PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00037124-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

GRAS

Protein Properties

Length: 664aa MW: 73880.1 Da PI: 4.9372

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00037124-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	434.6	7.3e-133	293	664	2	374
GRAS 2 velLlecAeavss..gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 +elL++cA+av++ +d ++++l+a+l++ +s g+pmqRl ay++e++ arla+s+s +yk+l+++e + s e l+++++++ev+P++k PSME_00037124-RA 293 KELLIACAKAVADsaNDSVKIDKLIAELRQVVSVCGEPMQRLGAYMVEGIVARLASSGSIIYKSLRCKEPT---SPELLSYMQVLFEVCPYFK 382 689******9843555699*********************************************9...9************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 f++++aN aI ea++ e+rvHiiDf+i qG QW++L+qaLa+Rp+gpp++ iTg+++p s+ + le +g+rL+k+Ae ++vpfef++ v PSME_00037124-RA 383 FGYMAANGAIAEAFKDEDRVHIIDFQIAQGSQWVTLIQALAARPRGPPHVCITGIDDPVSQyaRGGGLELVGKRLSKLAEICNVPFEFRP-VP 474 ******************************************************99999999********************.68 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 +d+++++L+++ g+alaVn+++qlh+++desv+++++rd++L++vk+l Pkv+++veqe+++n+++Fl rf+e+l+yysa+f+sl+++lp PSME_00037124-RA 475 VMGTDVQVNMLKCEAGDALAVNFSFQLHHMPDESVNTSNHRDRLLRMVKGLAPKVLTIVEQESNTNTAPFLLRFMETLSYYSAIFESLDVTLP 567 8999************************************************************************************* PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 r+s+eri+vE+++l+r+ivn++acegaer+erhe ++kW++rl++aGFkp+pls+ +++++k+ll+ + ++ y++ e++++l+lgW +rpL++ PSME_00037124-RA 568 RDSKERINVEEHCLARDIVNIIACEGAERIERHELMGKWKSRLTMAGFKPYPLSSIVNSTIKSLLEGYCQK-YSLLERDDTLYLGWLNRPLIA 659 *****************************************************************66.***************** PP GRAS 370 vSaWr 374 +SaW+ PSME_00037124-RA 660 ASAWQ 664 **6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.956	266	645	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-130	293	664	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0005829	Cellular Component	cytosol
GO:0004871	Molecular Function	signal transducer activity

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence Send to blast
MNVQFKTEVV AAGQNSQYVL GHPHKTFGTC LPDPGPSIAS NMSHEQASGS HEWIHGTPKT 60 SYQNFPCSPQ EDISYGLGHS TRTHECYRSD KYRLSDGSVQ SSPLHDNDSL QSQRSTHEAL 120 PYSTGHSFYS SPSVQSCSSS GSPASPQVSQ NYPSGLHYFH SPLEPYGLAG SGYSGTEQEE 180 DLKYMLQELE TALLVSESDD PDNFGSAYEE HRFPEYSEWN FEAMHDTTDN YCQSSLSVYP 240 KPEQVEVSSM TMNHVKVEIV NEVDLGIVCS STINASEERK EELEFDIPYG DVKELLIACA 300 KAVADSANDS VKIDKLIAEL RQVVSVCGEP MQRLGAYMVE GIVARLASSG SIIYKSLRCK 360 EPTSPELLSY MQVLFEVCPY FKFGYMAANG AIAEAFKDED RVHIIDFQIA QGSQWVTLIQ 420 ALAARPRGPP HVCITGIDDP VSQYARGGGL ELVGKRLSKL AEICNVPFEF RPVPVMGTDV 480 QVNMLKCEAG DALAVNFSFQ LHHMPDESVN TSNHRDRLLR MVKGLAPKVL TIVEQESNTN 540 TAPFLLRFME TLSYYSAIFE SLDVTLPRDS KERINVEEHC LARDIVNIIA CEGAERIERH 600 ELMGKWKSRL TMAGFKPYPL SSIVNSTIKS LLEGYCQKYS LLERDDTLYL GWLNRPLIAA 660 SAWQ

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence Send to blast

MNVQFKTEVV AAGQNSQYVL GHPHKTFGTC LPDPGPSIAS NMSHEQASGS HEWIHGTPKT  60
SYQNFPCSPQ EDISYGLGHS TRTHECYRSD KYRLSDGSVQ SSPLHDNDSL QSQRSTHEAL  120
PYSTGHSFYS SPSVQSCSSS GSPASPQVSQ NYPSGLHYFH SPLEPYGLAG SGYSGTEQEE  180
DLKYMLQELE TALLVSESDD PDNFGSAYEE HRFPEYSEWN FEAMHDTTDN YCQSSLSVYP  240
KPEQVEVSSM TMNHVKVEIV NEVDLGIVCS STINASEERK EELEFDIPYG DVKELLIACA  300
KAVADSANDS VKIDKLIAEL RQVVSVCGEP MQRLGAYMVE GIVARLASSG SIIYKSLRCK  360
EPTSPELLSY MQVLFEVCPY FKFGYMAANG AIAEAFKDED RVHIIDFQIA QGSQWVTLIQ  420
ALAARPRGPP HVCITGIDDP VSQYARGGGL ELVGKRLSKL AEICNVPFEF RPVPVMGTDV  480
QVNMLKCEAG DALAVNFSFQ LHHMPDESVN TSNHRDRLLR MVKGLAPKVL TIVEQESNTN  540
TAPFLLRFME TLSYYSAIFE SLDVTLPRDS KERINVEEHC LARDIVNIIA CEGAERIERH  600
ELMGKWKSRL TMAGFKPYPL SSIVNSTIKS LLEGYCQKYS LLERDDTLYL GWLNRPLIAA  660
SAWQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-61	296	664	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT115341	0.0	BT115341.1 Picea glauca clone GQ03614_J13 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006836764.1	0.0	scarecrow-like protein 21
Swissprot	Q8GVE1	0.0	CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBL	A0A0D6QZI2	0.0	A0A0D6QZI2_ARACU; Uncharacterized protein
STRING	ERM99617	0.0	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	0.0	GRAS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627] Tanabe S, et al. The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23. Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51 [PMID:26287768]