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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PSME_00037046-RA |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family |
NAC |
Protein Properties |
Length: 154aa MW: 18032 Da PI: 8.6288 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PSME_00037046-RA | genome | PRS | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 141 | 6.8e-44 | 24 | 150 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
pGfrF Pt+eel+++yLkk+++g + +++ i+++d+y+++Pw+Lp +++ ek+w+fF++r++k+ r++r t sgyWkatg+d+++
PSME_00037046-RA 24 IPGFRFYPTEEELLSFYLKKRIQGGQQVNFDIiIPTLDMYRYDPWELPgLAIDVAEKQWFFFVPRETKKC--ARPTRLTVSGYWKATGSDRAI 114
69*********************9995555555***************77888999*********99875..7******************** PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
++ e +glkktLvfykg+ap g++tdW+m+eyr+
PSME_00037046-RA 115 RNELLECIGLKKTLVFYKGKAPLGQRTDWIMNEYRM 150
**99999***************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 154 aa
Download sequence Send
to blast |
MRMAMAFLEE IYNDGAFKGE LPVIPGFRFY PTEEELLSFY LKKRIQGGQQ VNFDIIIPTL 60 DMYRYDPWEL PGLAIDVAEK QWFFFVPRET KKCARPTRLT VSGYWKATGS DRAIRNELLE 120 CIGLKKTLVF YKGKAPLGQR TDWIMNEYRM PDLA
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-37 | 20 | 150 | 14 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-37 | 20 | 150 | 14 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-37 | 20 | 150 | 14 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-37 | 20 | 150 | 14 | 142 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-37 | 20 | 150 | 14 | 142 | NAC domain-containing protein 19 |
4dul_B | 3e-37 | 20 | 150 | 14 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |