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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PSME_00036304-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
| Family |
NAC |
| Protein Properties |
Length: 186aa MW: 21132.1 Da PI: 9.6279 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00036304-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 159.7 | 1.2e-49 | 33 | 162 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lppGfrFhPtdeelvv+yLkkk+++++l++ ++i+e+d+yk+ Pw+Lp k++ +e+ewyfFs+rd+ky++g r+n a++ gyWkatg dk++l
PSME_00036304-RA 33 LPPGFRFHPTDEELVVHYLKKKASSTPLPV-TIIAEIDLYKFYPWELPGKATFGEQEWYFFSPRDRKYPNGARPNSAATYGYWKATGMDKPIL 124
79****************************.89***************8888999*********************9999************* PP
NAM 94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
++ ++++vg+kk vfy gr pkg kt+W+mheyrl
PSME_00036304-RA 125 TStsgGTQKVGVKKAPVFYGGRPPKGIKTNWIMHEYRL 162
998888899***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 186 aa
Download sequence Send
to blast |
ILSEFRQFDF FCSNCELMES PASFLGSHQQ PQLPPGFRFH PTDEELVVHY LKKKASSTPL 60
PVTIIAEIDL YKFYPWELPG KATFGEQEWY FFSPRDRKYP NGARPNSAAT YGYWKATGMD 120
KPILTSTSGG TQKVGVKKAP VFYGGRPPKG IKTNWIMHEY RLADSGARPS SFPNKKGSLR 180
IDDWVL
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-64 | 30 | 186 | 14 | 159 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-64 | 30 | 186 | 14 | 159 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-64 | 30 | 186 | 14 | 159 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-64 | 30 | 186 | 14 | 159 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-64 | 30 | 186 | 17 | 162 | NAC domain-containing protein 19 |
| 3swm_B | 2e-64 | 30 | 186 | 17 | 162 | NAC domain-containing protein 19 |
| 3swm_C | 2e-64 | 30 | 186 | 17 | 162 | NAC domain-containing protein 19 |
| 3swm_D | 2e-64 | 30 | 186 | 17 | 162 | NAC domain-containing protein 19 |
| 3swp_A | 2e-64 | 30 | 186 | 17 | 162 | NAC domain-containing protein 19 |
| 3swp_B | 2e-64 | 30 | 186 | 17 | 162 | NAC domain-containing protein 19 |
| 3swp_C | 2e-64 | 30 | 186 | 17 | 162 | NAC domain-containing protein 19 |
| 3swp_D | 2e-64 | 30 | 186 | 17 | 162 | NAC domain-containing protein 19 |
| 4dul_A | 2e-64 | 30 | 186 | 14 | 159 | NAC domain-containing protein 19 |
| 4dul_B | 2e-64 | 30 | 186 | 14 | 159 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}. |
| UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
