PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

PSME_00034758-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 310aa MW: 34467.2 Da PI: 7.501

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00034758-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.8	0.00022	175	250	10	55
HHHHHHHHHHHHHHHCTSCCC................................TTS-.STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkas.............................kapskK.lsKaeiLekAveYIksLq 55 + RR++i +++ L++l+P +s k+ + Ka +L + ++Y++sLq PSME_00034758-RA 175 KVRREKISERMKFLQDLVPGCSkvvhdicvlffsdhidcfakwifhaahlnKGLCLQaTGKAVMLDEIINYVQSLQ 250 67****************999**********************996666666889***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.474	165	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-10	175	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-10	178	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-10	229	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-10	231	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MYHTRAERAE RLSCFGVGGG SLNLNESASA PFHRSVIDNS AMSRIPRPNM AELTKVSDTS 60 LSKEEFCAAE TGVRKARRLS RSSTPGHGTL GNESDDAEVS TAHEEYSSSD QNTSEAAPNA 120 FNGRKRKQMQ KDKGKDFASL QAEKETQITE AVDGLKGMKY KTVEGVKEKD DVKYKVRREK 180 ISERMKFLQD LVPGCSKVVH DICVLFFSDH IDCFAKWIFH AAHLNKGLCL QATGKAVMLD 240 EIINYVQSLQ QQVEFLSMKL AAVNPWMEFN VEGILAKDAS PVIISCRKGG TSIEDLTEKY 300 LDMIIKVAFL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT113151	0.0	BT113151.1 Picea glauca clone GQ03326_F21 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LLM2	4e-44	B8LLM2_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	5e-32	bHLH family protein