PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034651-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 840aa    MW: 93087.1 Da    PI: 6.1511
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034651-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.1e-20125180156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t++q++e+e++F+++++p++++r++L++kl+L  rq+k+WFqNrR+++k
  PSME_00034651-RA 125 KKPYHRHTPQQIQEMEAFFKECPHPDEKQRQQLSRKLRLAPRQIKFWFQNRRTQMK 180
                       78999************************************************998 PP
2START29.41.8e-10324400269
                       HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCG CS
             START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddk 69 
                       la + ++el+++++ +++ W +s+     e +++d+++++f+ ++     +++ea+r  g+v+m++ +lve+l+d  
  PSME_00034651-RA 324 LAVASMDELIRMIQMQQACWITSPhdgvkETLDYDKYIRQFPGNEQkplgYKTEASRHAGAVIMNSFNLVETLMDAV 400
                       57889************************************7776699**************************975 PP
3START127.71.4e-4043358664206
                       HHCCCGG.CT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE CS
             START  64 ellddke.qWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvR 144
                       e+l++ + ++ e ++    +a+tlev+ +g      ++lqlm++elq+lspl p R f+f+R+++q+g g w++vdv  d+  ++  ++s++ 
  PSME_00034651-RA 433 EILHTTQnRYAELFPsiisRATTLEVLYTGlgdtrnNELQLMYMELQFLSPLGPtRGFYFLRFCQQHGPGLWAVVDVYADNLMENR-DPSMAN 524
                       4444444444444444445******************************************************************9.9***** PP

                       -EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 145 aellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       ++++pSg++i++++n+ s+vtw+eh+++++r +h l+rslv+sg+a+g ++w++ lqrqce+
  PSME_00034651-RA 525 CRRRPSGCIIHDLPNNCSNVTWLEHIEYDDRGVHDLYRSLVSSGMAFGSQRWLSILQRQCER 586
                       ************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-22106180IPR009057Homeodomain-like
SuperFamilySSF466895.01E-20112183IPR009057Homeodomain-like
PROSITE profilePS5007117.216122182IPR001356Homeobox domain
SMARTSM003891.2E-18124186IPR001356Homeobox domain
PfamPF000463.4E-18125180IPR001356Homeobox domain
CDDcd000861.27E-19125183No hitNo description
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
PROSITE profilePS5084830.533314589IPR002913START domain
CDDcd088752.81E-91318585No hitNo description
SMARTSM002341.2E-31323586IPR002913START domain
PfamPF018529.2E-6325399IPR002913START domain
SuperFamilySSF559616.04E-20424587No hitNo description
PfamPF018529.9E-34450586IPR002913START domain
SuperFamilySSF559615.22E-14601775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MNIDFGSQVM SFGFGSSAMG GAAVVNKLSS NKRPFTGNSC NDMSYAGMIA SSSQTPNLDM  60
NIYSSTPKLA LTLTSGLDSK GEMIGRSRDH GKNKIEEEYE SRSGSENVDG NGSGDDQDDN  120
QPNRKKPYHR HTPQQIQEME AFFKECPHPD EKQRQQLSRK LRLAPRQIKF WFQNRRTQMK  180
AQQERHENAT LRDENEKLRM ENLSIREAMT NPICCSCGGS AMLSDIPSEE QQLRLENARL  240
RDELDRVCAI TGKLCGRPIP QMVSHSPMHN ASLAMATVSA GVNILGSQPT VNPTTDFLQG  300
LSTVDVAGRA GSPRVVDKTK ALGLAVASMD ELIRMIQMQQ ACWITSPHDG VKETLDYDKY  360
IRQFPGNEQK PLGYKTEASR HAGAVIMNSF NLVETLMDAV CNQTATVCAS GSSVFSIFYL  420
YVTGGVDTVE LTEILHTTQN RYAELFPSII SRATTLEVLY TGLGDTRNNE LQLMYMELQF  480
LSPLGPTRGF YFLRFCQQHG PGLWAVVDVY ADNLMENRDP SMANCRRRPS GCIIHDLPNN  540
CSNVTWLEHI EYDDRGVHDL YRSLVSSGMA FGSQRWLSIL QRQCERLALL MEINVDPADA  600
RRRSLLKLAQ RMTSEFCNNL SASDVNNWAT LSANGDEDIR VSARKAMGNP ALPGRVVLSA  660
ATSIWLPVSP QKSFDFVRDE RHRSKWDVLT ANDQLQEITC IIKGHDHANN VRLLGSNGIN  720
ANQTVFILQE CCTDAFGSTV VYAPVDFAPM QSVMNGGNSD YVEIFPSGFV IFPDGVWAQT  780
ENGSSSNSMH NGGSILTVAF QILLDNMTTG TPSMEDVQAV QRLISCTVQK IKSSLILDSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255501.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A0C9QQ050.0A0A0C9QQ05_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_14231_3459 transcribed RNA sequence
STRINGXP_010255501.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein