PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

PSME_00033574-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 541aa MW: 59013.2 Da PI: 6.0223

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00033574-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.2	0.00016	443	481	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L++l+ + +K + a++L +A+ YIk Lq PSME_00033574-RA 443 RKEKLGDRITALQQLVSPF-----GKTDTASVLLEAIGYIKFLQ 481 677888999*****998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.528	431	480	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.23E-6	441	485	No hit	No description
SuperFamily	SSF47459	6.15E-10	441	487	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0045	442	486	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-8	445	488	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MAEEAETSAT VSSGGNWWNA VSTAGSSSSL VSEWSNINML QPSPRASAAL TDIQNLNWSS 60 SSNHHIRNSG NGEDVDNLSG SITNNTSSSL TSMDSGHQEL VDSGSLLGQF AQGVSDNNNL 120 WNQMLLGSSE GMQSNPVANL NEVLYSRALR QELVEPSDQL KKIQQELVPL QGWEFRNMAS 180 FQGAEDIHLN PQQQQTPLLY NLDDRLQSSN AHALPDLCRW SVAPPKQPGH AGLPRNIALN 240 AAFSSTPQFD LSRIKQEYSG PYSNPDLGVS LSSNTQLLQG FGIHSEPNFK NEGFSNLLES 300 ATTKAFLKPA MAARGCHITG DDYPGRWLPT NSLSQMLPSS PSKQSVLNFG SMSKQVLDFS 360 GCKPDHLKSQ QASKTDCSLQ YFPDGKQIHG PAQHRTMPHG EEARDSSCDT KRNNSCTDQS 420 TAEAIFKRPR IETGSTLPTF KVRKEKLGDR ITALQQLVSP FGKTDTASVL LEAIGYIKFL 480 QDQVQNQDHK GWGSSDKKDS DEPKQDLRSR GLCLVPVSCT VHVANDNGAD YWTPSLGGAY 540 R

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MAEEAETSAT VSSGGNWWNA VSTAGSSSSL VSEWSNINML QPSPRASAAL TDIQNLNWSS  60
SSNHHIRNSG NGEDVDNLSG SITNNTSSSL TSMDSGHQEL VDSGSLLGQF AQGVSDNNNL  120
WNQMLLGSSE GMQSNPVANL NEVLYSRALR QELVEPSDQL KKIQQELVPL QGWEFRNMAS  180
FQGAEDIHLN PQQQQTPLLY NLDDRLQSSN AHALPDLCRW SVAPPKQPGH AGLPRNIALN  240
AAFSSTPQFD LSRIKQEYSG PYSNPDLGVS LSSNTQLLQG FGIHSEPNFK NEGFSNLLES  300
ATTKAFLKPA MAARGCHITG DDYPGRWLPT NSLSQMLPSS PSKQSVLNFG SMSKQVLDFS  360
GCKPDHLKSQ QASKTDCSLQ YFPDGKQIHG PAQHRTMPHG EEARDSSCDT KRNNSCTDQS  420
TAEAIFKRPR IETGSTLPTF KVRKEKLGDR ITALQQLVSP FGKTDTASVL LEAIGYIKFL  480
QDQVQNQDHK GWGSSDKKDS DEPKQDLRSR GLCLVPVSCT VHVANDNGAD YWTPSLGGAY  540
R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT107531	0.0	BT107531.1 Picea glauca clone GQ03108_M09 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	3e-38	bHLH family protein