PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00031117-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 270aa    MW: 29749.8 Da    PI: 8.558
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00031117-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26084.91.1e-264101193
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++Cvl+p++     +++q+k++ +++k++G+s +++l+++ pe+ r+ +++sl+yeA+ r+ +P+yG++g++ ++++  +
  PSME_00031117-RA   4 SCNGCRVLRKGCSDSCVLRPCLhwirtAESQAKATIFLAKFYGRSGLVNLISSGPEHMRPGIFRSLLYEACGRMVNPIYGSLGLFCSGKWAEC 96 
                       6*********************9999778899**********************************************************999 PP

            DUF260  89 qlkae 93 
                       q+ +e
  PSME_00031117-RA  97 QAGVE 101
                       98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.2933109IPR004883Lateral organ boundaries, LOB
PfamPF031959.8E-224100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDSCV LRPCLHWIRT AESQAKATIF LAKFYGRSGL VNLISSGPEH  60
MRPGIFRSLL YEACGRMVNP IYGSLGLFCS GKWAECQAGV ESILRGTFGA VTQGDTAPSH  120
ILPIEAMPSA LHRTRGRGRL KGLSKSKHKV REGELAAISN HMDSSSKSDD SAALTNAFEK  180
VDNGKLHEKY GEKYSMFLRG KEVQEEFFAT QPQTQYSNDL CNLKTSPEPP RNAVELELTL  240
GSRGSSPSTP DKVSAGDLRW SEAHCEQWME
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282602.18e-60PREDICTED: LOB domain-containing protein 40
RefseqXP_010263769.12e-59PREDICTED: LOB domain-containing protein 41-like
TrEMBLA0A3G6J9E03e-59A0A3G6J9E0_PINTA; ASYMMETRIC LEAVES 2-like protein 37
STRINGVIT_01s0011g03540.t013e-59(Vitis vinifera)
STRINGXP_010263769.17e-59(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.16e-58LOB domain-containing protein 40