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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PSME_00030678-RA |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family |
NAC |
Protein Properties |
Length: 245aa MW: 28121.7 Da PI: 8.443 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PSME_00030678-RA | genome | PRS | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 177.7 | 3.1e-55 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrF Ptdeelv +yLk kv+g k+el evi+evdiyk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd+e
PSME_00030678-RA 6 LPPGFRFYPTDEELVAYYLKGKVHGWKIEL-EVIPEVDIYKCEPWDLPdKsLLPERDLEWYFFSPRDRKYPKGSRTNRATEAGYWKATGKDRE 97
79****************************.99***************5434445666*********************************** PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
v s + ++vg+kktLvfy grap+g++t+Wvmheyrl
PSME_00030678-RA 98 VSS-RMSTVGMKKTLVFYGGRAPHGSRTNWVMHEYRL 133
**9.8999***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MAQTSLPPGF RFYPTDEELV AYYLKGKVHG WKIELEVIPE VDIYKCEPWD LPDKSLLPER 60 DLEWYFFSPR DRKYPKGSRT NRATEAGYWK ATGKDREVSS RMSTVGMKKT LVFYGGRAPH 120 GSRTNWVMHE YRLHEMEFEG SASFPDAYAL CRVFKKMKPG PRIGNQCGAP VENAFSGCVL 180 NLFNQNMISS VEQSKERPSP LSQEQKDQPN SRECSSQIIK DRNVDDGFPS HNGSKNHSKV 240 SETFY
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 2e-60 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-60 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-60 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-60 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-60 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-60 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-60 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-60 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-60 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-60 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-60 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-60 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-60 | 1 | 156 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-60 | 1 | 156 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}. |