PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00029399-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 373aa    MW: 42148.4 Da    PI: 7.8395
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00029399-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.41.7e-50121391128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrF Pt+eelvv+yL+kk+++++l++  +i++vd+yk++Pw+Lp+k+  +e+ewyfF++r++ky++g+r+nra+ sgyWkatg dk+++
  PSME_00029399-RA  12 LPPGFRFFPTEEELVVHYLCKKAASQSLPV-PIIADVDLYKYDPWQLPEKALFGEREWYFFTPRNRKYPNGSRPNRAAGSGYWKATGADKPIT 103
                       79****************************.88***************8888899************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +k +++ vg+kk Lvfy g+apkg+kt+W+m+ey l
  PSME_00029399-RA 104 AKgGKKRVGVKKALVFYVGKAPKGSKTNWLMQEYCL 139
                       *966777***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-629165IPR003441NAC domain
PROSITE profilePS5100558.59412165IPR003441NAC domain
PfamPF023651.5E-2413139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGRRNAEAEL HLPPGFRFFP TEEELVVHYL CKKAASQSLP VPIIADVDLY KYDPWQLPEK  60
ALFGEREWYF FTPRNRKYPN GSRPNRAAGS GYWKATGADK PITAKGGKKR VGVKKALVFY  120
VGKAPKGSKT NWLMQEYCLA DLNSPARKKD SLRLDDWVLC RIYNRKLSAA KLALEQKESS  180
SDVPMETIDE KEIENKLTST SIEHSGIEES KPFSDHLSKL GPSPISYNAI SPNIASPMTS  240
NICFQNLDFF QNSTLAFRGN NTLEAPVQNT AFNPISSSIN HQWTNCNSTD LISGLHAESS  300
RSKPSSFSEP ISEKEVQSSF RLENFSQEQQ QLLFNFSLES LQNSFPCLDQ ITFPDAHRDS  360
FTNFNGSDYL LRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-8241667169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792531.14e-96NAC domain-containing protein 68-like isoform X2
RefseqXP_010922868.23e-95NAC domain-containing protein 68
RefseqXP_020254522.14e-96LOW QUALITY PROTEIN: NAC domain-containing protein 68-like
TrEMBLA0A0D6R3P91e-161A0A0D6R3P9_ARACU; Uncharacterized protein
STRINGXP_010257746.11e-94(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-80NAC family protein