PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00028581-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

GRAS

Protein Properties

Length: 790aa MW: 87858 Da PI: 6.4423

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00028581-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	399.5	3.4e-122	412	781	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkf 93 ++lL+ecA+a+s+g+ +a +++ +l l s +gdpmqRl+ay++e+L arl s ++ly++l+ +et+ +++ +a++l +++v+P+++f PSME_00028581-RA 412 RKLLVECATAISEGESDNALTIIMKLMPLISVYGDPMQRLTAYMVEGLVARLGPSAQSLYDTLKWKETP---TKDISSATRLqLYKVCPYIEF 501 689***************************************************************9...67777777778****** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 ++++a ++Ilea+++ee+vHiiDf+i++ +++L+++L+++ +gpp+lRiT+v++p+s l+ ++e+L++fA++lgv++ef++ + + PSME_00028581-RA 502 GYMAAISTILEALKEEEKVHIIDFEIGEANLYANLIRKLSAKVGGPPKLRITAVDDPDSIsrCVGDLHMVQEQLKNFATRLGVHLEFQI-IPQ 593 *****************************************************99988999*******************9.7 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 + ed+++ +L+++p+EalaVn+++qlh+++desvs++++rd++L++vk+lsPkvv+vve+e+++n+++Fl rf+eal+yysa+f+sl+ l r PSME_00028581-RA 594 KAEDIQPYMLDCRPDEALAVNFAFQLHHMPDESVSTRNPRDQLLRMVKGLSPKVVTVVEKEMNTNTAPFLPRFMEALNYYSAVFESLDIRLKR 686 ******************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 es+er ++E+++l+r+ivn+vacegaer+er e ++kWr+r+++aGF+ p++++++++++ll + ++++ yr++ee+g+l +gW d+ Lv+v PSME_00028581-RA 687 ESRERFNIEKQCLARDIVNIVACEGAERIERYEVAGKWRARMTMAGFTMHPINTSVYDSVRLLFESYGNK-YRLKEEKGALHFGWLDKVLVVV 778 ****************************************************************66.****************** PP GRAS 371 SaW 373 SaW PSME_00028581-RA 779 SAW 781 * PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.84	385	763	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-119	412	781	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 790 aa Download sequence Send to blast
VGDGVVVGGI VEEDLGLCLS ELEPLAECFP GGENKNTKCS QCPPLPLNTL WKLELPSASN 60 AAAAAIYLII VIIIPLGHAC NNGLPCRESC FDPCKSRPLE SSGSSNSEGC LNVGRNNRIG 120 TPPVNPLNVM KLHCRPDLSG MTSNPRAQLG QFTSEIHTQT MELLSKRSLS EMERQVMFRA 180 VRQRNHNAPL LPLSSADSVV LSHSSASPSE SVSSHPYHRH QLNISPCYSP SSICSPASLP 240 TISDFNVEKF LSLPALQSAA ALERPASNQN FAHNHGFILP KLKSPDSHRV AIDNAKTDEY 300 QEGMRHKLQE LERELLSDSD DAFNVSALSP EQSSQLDREW IDTIQNLLSE EAVLHPTISG 360 ESQGYHNSNK ENPTSQASRS QLEDQKHSFS ISSQQQPKTS ATQPRDAASS SRKLLVECAT 420 AISEGESDNA LTIIMKLMPL ISVYGDPMQR LTAYMVEGLV ARLGPSAQSL YDTLKWKETP 480 TKDISSATRL QLYKVCPYIE FGYMAAISTI LEALKEEEKV HIIDFEIGEA NLYANLIRKL 540 SAKVGGPPKL RITAVDDPDS ISRCVGDLHM VQEQLKNFAT RLGVHLEFQI IPQKAEDIQP 600 YMLDCRPDEA LAVNFAFQLH HMPDESVSTR NPRDQLLRMV KGLSPKVVTV VEKEMNTNTA 660 PFLPRFMEAL NYYSAVFESL DIRLKRESRE RFNIEKQCLA RDIVNIVACE GAERIERYEV 720 AGKWRARMTM AGFTMHPINT SVYDSVRLLF ESYGNKYRLK EEKGALHFGW LDKVLVVVSA 780 WHLEPHSKIK

Sequence ? help Back to Top

Protein Sequence Length: 790 aa Download sequence Send to blast

VGDGVVVGGI VEEDLGLCLS ELEPLAECFP GGENKNTKCS QCPPLPLNTL WKLELPSASN  60
AAAAAIYLII VIIIPLGHAC NNGLPCRESC FDPCKSRPLE SSGSSNSEGC LNVGRNNRIG  120
TPPVNPLNVM KLHCRPDLSG MTSNPRAQLG QFTSEIHTQT MELLSKRSLS EMERQVMFRA  180
VRQRNHNAPL LPLSSADSVV LSHSSASPSE SVSSHPYHRH QLNISPCYSP SSICSPASLP  240
TISDFNVEKF LSLPALQSAA ALERPASNQN FAHNHGFILP KLKSPDSHRV AIDNAKTDEY  300
QEGMRHKLQE LERELLSDSD DAFNVSALSP EQSSQLDREW IDTIQNLLSE EAVLHPTISG  360
ESQGYHNSNK ENPTSQASRS QLEDQKHSFS ISSQQQPKTS ATQPRDAASS SRKLLVECAT  420
AISEGESDNA LTIIMKLMPL ISVYGDPMQR LTAYMVEGLV ARLGPSAQSL YDTLKWKETP  480
TKDISSATRL QLYKVCPYIE FGYMAAISTI LEALKEEEKV HIIDFEIGEA NLYANLIRKL  540
SAKVGGPPKL RITAVDDPDS ISRCVGDLHM VQEQLKNFAT RLGVHLEFQI IPQKAEDIQP  600
YMLDCRPDEA LAVNFAFQLH HMPDESVSTR NPRDQLLRMV KGLSPKVVTV VEKEMNTNTA  660
PFLPRFMEAL NYYSAVFESL DIRLKRESRE RFNIEKQCLA RDIVNIVACE GAERIERYEV  720
AGKWRARMTM AGFTMHPINT SVYDSVRLLF ESYGNKYRLK EEKGALHFGW LDKVLVVVSA  780
WHLEPHSKIK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-48	417	781	25	378	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT114502	1e-173	BT114502.1 Picea glauca clone GQ03515_N01 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D6R702	0.0	A0A0D6R702_ARACU; Uncharacterized protein
STRING	Aquca_014_00370.1	1e-162	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	1e-150	SCARECROW-like 1