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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PSME_00027176-RA |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family |
NAC |
Protein Properties |
Length: 387aa MW: 44187 Da PI: 6.4411 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PSME_00027176-RA | genome | PRS | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 124.8 | 7.1e-39 | 33 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lppGfrFhPtdeelvv+yLkkk+++++l+++e + +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l
PSME_00027176-RA 33 LPPGFRFHPTDEELVVHYLKKKASSTPLPAQE-------------T------FGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIL 106
79************************988832.............2......2679************************************* PP
NAM 94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
++ ++++vg+kk Lvfy gr pkg kt+W+mheyrl
PSME_00027176-RA 107 TStsgGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRL 144
998888899***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 387 aa
Download sequence Send
to blast |
ILSEFGQFDF FCSNCELMES PTSFLGSHQQ PQLPPGFRFH PTDEELVVHY LKKKASSTPL 60 PAQETFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSTS GGTQKVGVKK 120 ALVFYGGRPP KGIKTNWIMH EYRLADSGAR PSSFPNKKGS LTESIHFNYN WYIDFDDTVV 180 LQLDDWVLFR IYKKNGHSQR VQGAERDESP SVDEVMTSFP NIEQQNKLQL PKLGPFSGLL 240 ETDDPFIEGL LNDEAMDGNG NISRLPHQVH SSNLSHNNFN NRNDNNSDCQ FEVVPKQEAL 300 AVDNENKFNS LKRTLSLAAF GDEEIHFAKR FNDMQNNYSY NVNNNVSALL NSMQPNQTFQ 360 QQNFLSALSD RQQNFRLPYI QNMHWSS
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 7e-53 | 30 | 200 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-53 | 30 | 200 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-53 | 30 | 200 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-53 | 30 | 200 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-53 | 30 | 200 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-53 | 30 | 200 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-53 | 30 | 200 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-53 | 30 | 200 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-53 | 30 | 200 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-53 | 30 | 200 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-53 | 30 | 200 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-53 | 30 | 200 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-53 | 30 | 200 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-53 | 30 | 200 | 14 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}. |