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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PSME_00026978-RA |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family |
Trihelix |
Protein Properties |
Length: 302aa MW: 33772.2 Da PI: 9.8951 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PSME_00026978-RA | genome | PRS | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 45.6 | 1.9e-14 | 47 | 136 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ + +Li+ e+ +l+rg+lk+++W+evs+++ ++++++ +qCk++++ l+k+yk +k++ + + s+++++ +l+
PSME_00026978-RA 47 CWSEGATNTLIDSWGERYLNLNRGNLKQKHWREVSDAVnarsGGHKLRKTDVQCKNRLDTLKKKYKLEKARISTSALIGPSKWSFYAKLD 136
7*************************************9987788899***********************99998888899*****998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MEDGDRTHNV VGHHHHHPEG LTLGLPASNV PAALAATGGG GGSREDCWSE GATNTLIDSW 60 GERYLNLNRG NLKQKHWREV SDAVNARSGG HKLRKTDVQC KNRLDTLKKK YKLEKARIST 120 SALIGPSKWS FYAKLDNLIG PSRSKHLALK HFHPHPHLQL QPQPQPLPPP LPPPLPSKRP 180 DGGFNSVSSG SLDATESLPS DGPNEKGKRA RRSSSSSESP MRELAQAIMK FGEVYERIEK 240 EKQQQMMELE KHRMEFTRDL EVQRMQLFMQ TQIEVAKMEH AKHGGTEWPL EFGMTSNRDI 300 GA
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Functional Description ? help
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Source |
Description |
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G05550.2 | 3e-42 | sequence-specific DNA binding transcription factors |