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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00026652-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | ZF-HD | ||||||||
Protein Properties | Length: 294aa MW: 31615.3 Da PI: 8.8994 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.1 | 1.6e-31 | 82 | 137 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrY++C+kNhAa++G+ha+DGCgEfm+s g egta+alkC ACgCHRnFHRre e PSME_00026652-RA 82 IVRYRDCQKNHAANIGSHALDGCGEFMAS-GLEGTADALKCQACGCHRNFHRREIEG 137 689*************************9.999*********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 9.6E-29 | 83 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-19 | 83 | 133 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.0E-28 | 84 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.591 | 85 | 134 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.08E-17 | 223 | 292 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-30 | 224 | 293 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.9E-24 | 231 | 288 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MMDHHHSHHQ IPVSIPPVSV HDISRLQQHQ IYHNPTSIVH ETGTGNNIHS NSNNAHFSQN 60 GNGDDAKPLV EKPKKADSVE KIVRYRDCQK NHAANIGSHA LDGCGEFMAS GLEGTADALK 120 CQACGCHRNF HRREIEGEGG SGTSSLQDGW YLGSAGRSRV DKKRLLPGGG GGGGGGAGVP 180 LFSSPSPPPT GAHASGPQML MALSSACTLG DPDLHEGLVG HGIGSSSSAM KKRFRTKFSQ 240 DQKEKMHAFA DQLGWRIQKH DEAAVQQFCN EAGVRRHVLK VWMHNNKNTL GKKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-27 | 232 | 289 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF676904 | 0.0 | EF676904.1 Picea sitchensis clone WS02757_J24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | A2YWA6 | 1e-55 | ZHD2_ORYSI; Zinc-finger homeodomain protein 2 | ||||
Swissprot | Q6ZB90 | 1e-55 | ZHD2_ORYSJ; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | B8LM96 | 1e-164 | B8LM96_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 7e-55 | homeobox protein 22 |
Publications ? help Back to Top | |||
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