PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00025955-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 67aa    MW: 7825.18 Da    PI: 7.5109
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00025955-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.31.4e-14655149
               NAM  1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk 49
                      lp  frFhP +eel+++yLk k+++    ++ +vi+evd+yk+ePwd+p 
  PSME_00025955-RA  6 LPSAFRFHPMNEELISCYLKGKLSHGLkAPELKVITEVDLYKCEPWDFPG 55
                      6889******************887654777799**************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-13357IPR003441NAC domain
PROSITE profilePS5100517.868667IPR003441NAC domain
PfamPF023659.2E-6761IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MGTFALPSAF RFHPMNEELI SCYLKGKLSH GLKAPELKVI TEVDLYKCEP WDFPGNFNFL  60
FLTHRFM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884362.12e-15NAC domain-containing protein 45
RefseqXP_009418670.18e-16PREDICTED: NAC domain-containing protein 45-like isoform X1
RefseqXP_013584829.12e-15PREDICTED: NAC domain-containing protein 45-like
RefseqXP_018489098.12e-15PREDICTED: NAC domain-containing protein 45
SwissprotA4VCM03e-16NAC45_ARATH; NAC domain-containing protein 45
TrEMBLB8LLW83e-24B8LLW8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.11e-18NAC domain containing protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]