PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024743-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 447aa    MW: 50575.1 Da    PI: 5.3977
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024743-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.3e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg W+++Ede+l+++++++G g+W+ ++++ g+ R++k+c++rw +yl
  PSME_00024743-RA 14 RGLWSPDEDEKLINYITKYGYGCWSEVPEKSGLQRCGKSCRLRWINYL 61
                      788*******************************************97 PP
2Myb_DNA-binding50.83.7e-1667111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++++ E++l+++++++ G++ W+ Ia++++ gRt++++k++w+++
  PSME_00024743-RA  67 RGNFSPNEEKLIIHLHTMVGNR-WAYIASHLP-GRTDNEIKNYWNSW 111
                       89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-25664IPR009057Homeodomain-like
PROSITE profilePS5129423.88965IPR017930Myb domain
SuperFamilySSF466892.17E-2911108IPR009057Homeodomain-like
SMARTSM007175.2E-121363IPR001005SANT/Myb domain
PfamPF002493.1E-141461IPR001005SANT/Myb domain
CDDcd001676.39E-111761No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2465116IPR009057Homeodomain-like
SMARTSM007173.1E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129418.39966116IPR017930Myb domain
PfamPF002497.9E-1467111IPR001005SANT/Myb domain
CDDcd001672.81E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MGRHLCCNQQ KVKRGLWSPD EDEKLINYIT KYGYGCWSEV PEKSGLQRCG KSCRLRWINY  60
LRPDIRRGNF SPNEEKLIIH LHTMVGNRWA YIASHLPGRT DNEIKNYWNS WIKKKLAKAE  120
IISKNIEASK VHSNLPQFLF EQAATLGNDC KLLKTEMTTD GHAVPQSHDL RSKEKCETFP  180
LWDYKMINSS NTGNSLYGVE ESKTALTIDS LLIRTDSETG AIKEFNTCDP SSILINSSSK  240
NSDLQYILQR DNGLQVQDLP ASNTWHGYSS LNPIEGSFYF NPNSENSNGL HSTSSMNDSD  300
FMRSLDMVPL IYSQHETLDP TNHANVATLW ESGSSSNGVD LGYSECLYSA DQYNHGTENS  360
CSYLPPLYDA SEESAAIDIK HNENNSLRYL EQIQHNEINI AQEMDAIQQI FDCGEQNSNL  420
VTTIQYCMGS HSPVSDSHHP QDTFNLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6010650.0EF601065.1 Picea glauca R2R3-MYB transcription factor MYB2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYE60.0A5JYE6_PICGL; R2R3-MYB transcription factor MYB2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.15e-74myb domain protein 103