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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PSME_00024333-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family |
MYB |
| Protein Properties |
Length: 245aa MW: 27832.9 Da PI: 4.1455 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00024333-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 42 | 2.2e-13 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT+ Ed+ll ++++ +G W+ +++ g +R++k+c++rw +yl
PSME_00024333-RA 14 RGAWTAKEDKLLSEYIRIHGDAGWTNLPQKAGINRCGKSCRLRWINYL 61
89*******************9**********99************97 PP
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| 2 | Myb_DNA-binding | 53 | 7.8e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+ +++E+el+++ +++lG++ W++Ia +++ gRt++++k++w+++l
PSME_00024333-RA 67 RGNISPDEEELIIRMHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
7899******************.*********.************996 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MAISPCCSKE GLSRGAWTAK EDKLLSEYIR IHGDAGWTNL PQKAGINRCG KSCRLRWINY 60
LRPDIKRGNI SPDEEELIIR MHRLLGNRWS LIAGRLPGRT DNEIKNYWNT HLKKKLLMNK 120
RQDEMHNIKA RADSRLTLQN GVIKTTPVKI TAAVRHYEMV TPNRGSNIGF GLEDSYSGPA 180
TLDAETSDDD DDDDDNGDDD EGDDDDDEEG DVDDDDDDDE DDDDDEDEHD DDDHDDRGNV 240
DDDDR
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| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Zhou M, et al.
Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
Plant J., 2015. 84(2): p. 395-403
[PMID:26332741] - Wada T,Hayashi N,Tominaga-Wada R
Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
Plant Signal Behav, 2015. 10(11): p. e1089372
[PMID:26339713] - Wada T,Tominaga-Wada R
CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
Plant Sci., 2015. 241: p. 260-5
[PMID:26706076] - Song L, et al.
A transcription factor hierarchy defines an environmental stress response network.
Science, 2017.
[PMID:27811239] - Zhou M, et al.
LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
Plant Physiol., 2017. 174(3): p. 1348-1358
[PMID:28483877] - Mondal SK,Roy S
Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
[PMID:28490275]
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