 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PSME_00023746-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family |
NAC |
| Protein Properties |
Length: 368aa MW: 41450.2 Da PI: 8.8933 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00023746-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 160.5 | 6.8e-50 | 16 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lppGfrFhPtdeel v+yLkkk+++++l++ ++i+e+d+yk++ w+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg++k++l
PSME_00023746-RA 16 LPPGFRFHPTDEELAVHYLKKKASSTPLPV-TIIAEIDLYKFDSWELPGKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTNKPIL 107
79****************************.89***************8888999************************************** PP
NAM 94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
++ ++++vg+kk Lvfy gr pkg kt+W+mheyrl
PSME_00023746-RA 108 AStsgGTQKVGVKKALVFYGGRPPKGIKTNWFMHEYRL 145
998888899***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 368 aa
Download sequence Send
to blast |
MESPASFSGS HQQPQLPPGF RFHPTDEELA VHYLKKKASS TPLPVTIIAE IDLYKFDSWE 60
LPGKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTNKPILAST SGGTQKVGVK 120
KALVFYGGRP PKGIKTNWFM HEYRLANSGA RPSSFPNKKG SLRLDDWVLC RIYKKNGHSQ 180
RVQGAERDES PSADEVMTSL PNIEQQKKLQ LPKLGPFSGL LETDDPFIEG LLNDEAMDGN 240
GNISRLPHQV HSSDLSHNNF SNSNNNNSDC QFEVVPKQEA LAVDNEKKFN SLKRNLSLAA 300
FGDEEIHSAK RFNDMQNNYS YNVNNNVSAL LNSMQPNQTF QQQNFLSALS DSQQNFRLPY 360
IQNMHWSS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 1e-72 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-72 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-72 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-72 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-72 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-72 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-72 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-72 | 13 | 181 | 17 | 174 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}. |
| UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:20005003}. |
