PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00023733-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 336aa    MW: 38025.8 Da    PI: 5.701
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00023733-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.8e-141865148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      r +WT+ Ed +l d+++++G g W++ +++ g+ R++k+c++rw++yl
  PSME_00023733-RA 18 RSAWTAKEDMILSDYIRLHGDGGWRSLPQKAGLMRCGKSCRLRWLNYL 65
                      789*******************************************97 PP
2Myb_DNA-binding52.89.4e-1771116148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ +++E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00023733-RA  71 RGNISPDEEELIIRLHRLLGNR-WTLIAGRLP-GRTDNEIKNYWNTHL 116
                       7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.111365IPR017930Myb domain
SuperFamilySSF466895.86E-2715112IPR009057Homeodomain-like
SMARTSM007177.4E-91767IPR001005SANT/Myb domain
PfamPF002492.2E-121865IPR001005SANT/Myb domain
CDDcd001678.19E-82065No hitNo description
Gene3DG3DSA:1.10.10.601.2E-202072IPR009057Homeodomain-like
PROSITE profilePS5129425.68866120IPR017930Myb domain
SMARTSM007173.4E-1670118IPR001005SANT/Myb domain
PfamPF002492.9E-1571116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2573120IPR009057Homeodomain-like
CDDcd001675.14E-1275116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
AASKMDRSPC CSRHGLKRSA WTAKEDMILS DYIRLHGDGG WRSLPQKAGL MRCGKSCRLR  60
WLNYLRPDIK RGNISPDEEE LIIRLHRLLG NRWTLIAGRL PGRTDNEIKN YWNTHLTKKM  120
LSITQSEDNG TENLKTMSES ALLKNYVFKT TPVRIETVVR EPEMVKIKVS KGYGCSYLSS  180
DNAKSLHGQE TVKSPRSSCD LIVNDAIITS EGSPHFDYFA GIPESLLNLN ELQSPDSNLL  240
PCQSDSGLKE FCREPVPFAT ETNEFYVGYS DQSNVQSVKC FNDADGQVLE DFFENTQQVD  300
WIHELDLPKA SPQSLGWLLC ESQQEQEGKF EFEGCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-22161205108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541301.15e-67transcription factor MYB23
RefseqXP_009361685.27e-67PREDICTED: transcription factor TT2
RefseqXP_028197056.15e-67transcription factor MYB23-like
TrEMBLA0A167V9111e-126A0A167V911_PICAB; Transcription factor MYB31
STRINGXP_009361685.12e-66(Pyrus x bretschneideri)
STRINGGLYMA13G16890.12e-66(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-53myb domain protein 3