PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

PSME_00023373-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 292aa MW: 32061.2 Da PI: 7.1327

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00023373-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.9	2.4e-15	112	158	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riNs +++Lr+llP+ +K +Ka+ L ++++++k+L PSME_00023373-RA 112 KNHSEAERRRRQRINSHLATLRTLLPSG-----TKTDKASLLAEVIDHVKDL 158 78***********************8.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.926	109	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.5E-13	112	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.56E-14	112	160	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.3E-15	112	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.11E-14	113	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-14	115	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	3.8E-6	196	265	No hit	No description
Gene3D	G3DSA:3.30.70.260	8.1E-9	196	268	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MEMFTGNSSL RKSLAERAFN QQTFPSGYSV PTSLAHLPDF QTGAFPFSSY GSHLQTTVSY 60 LNTNGVRHCE QNQLAQNGGS SLVLDNVRGE LVNASKMTLK DVLEAKALAA SKNHSEAERR 120 RRQRINSHLA TLRTLLPSGT KTDKASLLAE VIDHVKDLKR RASEIAQVSP VPTDVDELKV 180 EEDGAIEEGK IFIKASLCCD DRPDLMSDLI QTFQTLGLRT VKAEISTLAG RVKNVFIVTD 240 GEKDFEESEK RLPINSIQEA LRAVMERAAA TGELSAGSSI SNKRQRILPF DA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT106653	0.0	BT106653.1 Picea glauca clone GQ03007_E02 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002978655.2	2e-73	transcription factor bHLH30
Swissprot	Q9S7Y1	8e-55	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A0D6R7H8	8e-99	A0A0D6R7H8_ARACU; Uncharacterized protein
STRING	XP_010262767.1	2e-63	(Nelumbo nucifera)
STRING	XP_004297146.1	2e-63	(Fragaria vesca)
STRING	EFJ14235	2e-63	(Selaginella moellendorffii)
STRING	EFJ20102	2e-63	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	3e-57	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]