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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00022449-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | G2-like | ||||||||
Protein Properties | Length: 489aa MW: 56216.6 Da PI: 6.9631 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.8 | 2.1e-32 | 73 | 126 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++F++ave+LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+ PSME_00022449-RA 73 PRLRWTPDLHHCFMNAVERLGGQDRATPKLVLQLMDVKGLTIAHVKSHLQMYRS 126 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.653 | 69 | 129 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-32 | 69 | 128 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.3E-15 | 71 | 129 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-23 | 73 | 127 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.8E-8 | 74 | 125 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MEVQGEQSSS NDGVELNSRK RSASSEDLER PAKVFGGENR NPNTAKSSSN STVEGSEGKN 60 GGTARQYVRS KMPRLRWTPD LHHCFMNAVE RLGGQDRATP KLVLQLMDVK GLTIAHVKSH 120 LQMYRSMKND ENGQGIGLQS ENMEGRDHLL DCYSHSRTGL QQYENRRFLV NDDYESSQYY 180 NLLHRPTMQT FDHRLTTRYD RNPWAAHEDW LSRSYQIQLT NHDNLRSLYG WTSSNNLDLK 240 NKREKVLPVT RRDNKSDLLG STVYPHLSVQ WGKKQEEVKD RMCNLPEEGY FRPDFTGDLK 300 NISDQPTKHI RQVEIDWSRW KHGVEATVDS TNLGHGRLGT SCIGLADRNL QPAPVKCNEP 360 ITIDLEQESL PLQLQLQRGE QLLQQKEKLT LEIPESDYIR PERKKKTKEP NLQLMLKHAD 420 DQDQSWSEEE VDSSLSLSLF SKYQEKETES LKLATSRENK PEPKNFLQQA NTDTHKPPGI 480 STLDLTMSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-17 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-17 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-17 | 74 | 128 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-17 | 74 | 128 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-17 | 74 | 128 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-17 | 74 | 128 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-17 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-17 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-17 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-17 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-17 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-17 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00301 | DAP | Transfer from AT2G40260 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 2e-35 | G2-like family protein |