PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00022449-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 489aa    MW: 56216.6 Da    PI: 6.9631
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00022449-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.82.1e-3273126255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       prlrWtp+LH++F++ave+LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+
  PSME_00022449-RA  73 PRLRWTPDLHHCFMNAVERLGGQDRATPKLVLQLMDVKGLTIAHVKSHLQMYRS 126
                       8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.65369129IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-3269128IPR009057Homeodomain-like
SuperFamilySSF466894.3E-1571129IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-2373127IPR006447Myb domain, plants
PfamPF002493.8E-874125IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MEVQGEQSSS NDGVELNSRK RSASSEDLER PAKVFGGENR NPNTAKSSSN STVEGSEGKN  60
GGTARQYVRS KMPRLRWTPD LHHCFMNAVE RLGGQDRATP KLVLQLMDVK GLTIAHVKSH  120
LQMYRSMKND ENGQGIGLQS ENMEGRDHLL DCYSHSRTGL QQYENRRFLV NDDYESSQYY  180
NLLHRPTMQT FDHRLTTRYD RNPWAAHEDW LSRSYQIQLT NHDNLRSLYG WTSSNNLDLK  240
NKREKVLPVT RRDNKSDLLG STVYPHLSVQ WGKKQEEVKD RMCNLPEEGY FRPDFTGDLK  300
NISDQPTKHI RQVEIDWSRW KHGVEATVDS TNLGHGRLGT SCIGLADRNL QPAPVKCNEP  360
ITIDLEQESL PLQLQLQRGE QLLQQKEKLT LEIPESDYIR PERKKKTKEP NLQLMLKHAD  420
DQDQSWSEEE VDSSLSLSLF SKYQEKETES LKLATSRENK PEPKNFLQQA NTDTHKPPGI  480
STLDLTMSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-1774128458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-1774128458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-1774128357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-1774128357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-1774128357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-1774128357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-1774128458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-1774128458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-1774128458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-1774128458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-1774128458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-1774128458Protein PHOSPHATE STARVATION RESPONSE 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.12e-35G2-like family protein