 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PSME_00022333-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
| Family |
NAC |
| Protein Properties |
Length: 208aa MW: 23975.7 Da PI: 10.1291 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00022333-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 161 | 4.5e-50 | 44 | 170 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
ppGfr P deelvv+yL+kk++++ +++ +i+evd+yk++Pw+Lp k+ +ekewyfF++rd+ky++g+r+nra+ sgyWkatg d+++ +
PSME_00022333-RA 44 PPGFRLFPADEELVVHYLCKKASSQIIPV-PIIAEVDLYKYDPWQLPDKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGVDNPIND 135
8****************************.88***************8777899*************************************** PP
NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
k +++ vg+kk Lvfy g+apkg+kt+W+mheyrl
PSME_00022333-RA 136 KgGKKRVGIKKALVFYAGKAPKGSKTNWIMHEYRL 170
966777***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 208 aa
Download sequence Send
to blast |
MERLAKLIKV KSPTTNMGTS LGDFHEEQPW ILKNMDCHEH NQWPPGFRLF PADEELVVHY 60
LCKKASSQII PVPIIAEVDL YKYDPWQLPD KALFGEKEWY FFTPRDRKYP NGSRPNRAAG 120
SGYWKATGVD NPINDKGGKK RVGIKKALVF YAGKAPKGSK TNWIMHEYRL ADVSRPARKK 180
GSLRLDDWVL CRIYNKKISA EKLALEQK
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-81 | 44 | 202 | 18 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-81 | 44 | 202 | 18 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-81 | 44 | 202 | 18 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-81 | 44 | 202 | 18 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 4e-81 | 44 | 202 | 18 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 4e-81 | 44 | 202 | 18 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Taga Y, et al.
Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
Plant Signal Behav, 2009. 4(8): p. 740-2
[PMID:19820348] - Xia N, et al.
Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
Mol. Biol. Rep., 2010. 37(8): p. 3703-12
[PMID:20213512] - Takasaki H, et al.
The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
Mol. Genet. Genomics, 2010. 284(3): p. 173-83
[PMID:20632034] - Nakayama A, et al.
Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
BMC Plant Biol., 2013. 13: p. 150
[PMID:24093634] - Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
[PMID:26766411]
|
