PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Publication

Basic Information? help Back to Top

TF ID

PSME_00022332-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 172aa MW: 19120 Da PI: 9.6214

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00022332-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.1	4e-40	18	117	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++C+++pyf +p+kfa+vhk+FGasnv+k+l+++pe++r da++slvyeA+ar+rdPvyG++g+i +lq+q + ++ e PSME_00022332-RA 18 PCAACKLLRRRCAPECPFSPYFSPLDPQKFAAVHKVFGASNVSKMLTEVPESQRADAANSLVYEANARLRDPVYGSTGTIYSLQRQAQAMRLE 110 7******************************************************************************************** PP DUF260 94 lallkee 100 ++++++e PSME_00022332-RA 111 INAVRAE 117 *999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.048	17	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-39	18	115	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MTRRPILGSP AALNTITPCA ACKLLRRRCA PECPFSPYFS PLDPQKFAAV HKVFGASNVS 60 KMLTEVPESQ RADAANSLVY EANARLRDPV YGSTGTIYSL QRQAQAMRLE INAVRAEIMK 120 YKCRDPILQP TMIGVYNVNS EDCKVSNPTA GTINAVDHTV KQRYYSVINH NR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	9	135	2	128	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	9	135	2	128	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022746093.1	6e-70	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	6e-60	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A061FRT3	4e-68	A0A061FRT3_THECC; LOB domain-containing protein 15
STRING	EOY20040	6e-69	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-62	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]