PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021147-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 518aa    MW: 57601.4 Da    PI: 4.7181
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021147-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.51.2e-21188238155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++ykGVr++k +g+W+AeIrdps+     r +lg+fgtaeeAa a+++a++k++g
  PSME_00021147-RA 188 CRYKGVRQRK-WGKWAAEIRDPSK---GVRLWLGTFGTAEEAAHAYDEAARKIRG 238
                       78*******9.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.37E-32188245No hitNo description
PfamPF008476.0E-15188238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-30189246IPR001471AP2/ERF domain
PROSITE profilePS5103222.695189246IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-21189246IPR016177DNA-binding domain
SMARTSM003801.6E-35189252IPR001471AP2/ERF domain
PRINTSPR003671.4E-9190201IPR001471AP2/ERF domain
PRINTSPR003671.4E-9212228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MPSPQTLPKS LKTTSLKGLG KVKKETQDGD EPPFSRGLCM RKVKIVCNDP DATDSSSDEE  60
MKLESVPRKR LICEIEIPAD LGLFSMDNSE DEDEGDDKRN LEEPITNSEV ASDVNTHKIV  120
PASSEIVSPV ITHKSKPKKK SKRLASKRGT KKNEKVMMEA AERVNSGSFF RSSSVLRSFK  180
CRKAGKSCRY KGVRQRKWGK WAAEIRDPSK GVRLWLGTFG TAEEAAHAYD EAARKIRGPL  240
APTNFLSKRS EIVDIEHPVS RKTPKRPVKK VIYDGEKEKY YLIQTRSKGL DVSGKEYIYG  300
GLDGHTEDVL SSSSEFFSCI SDEYSDPCLV ASPSSVLEVS QSLVCPEFEE ELQHICSFLS  360
DPIGIDVSEQ LIEPSQQAGS SGQCEGNDLP ASQQGNSREG SCSRSEANFP SINDPLTIIY  420
PDGQKEKQQF NSGEQENSLS CFMDSFFQPF SATGEEHCYD DAQLSDLGDN YFMEEFGLGF  480
DNRECIKEKD LASLSNSVDL LDFDLDAEAL EWIDVCEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-19190245359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1038820.0BT103882.1 Picea glauca clone GQ02803_J22 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.16e-18ERF family protein