PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020754-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 408aa    MW: 45846.5 Da    PI: 8.4102
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020754-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.1e-52451721128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrF Ptdeelvv+yL+kk ++++l++  +i++vd+yk++Pw+Lp+k+  +ekewyfF++rd+ky++g+r+nra+ sgyWkatg dk+++
  PSME_00020754-RA  45 LPPGFRFCPTDEELVVHYLCKKGASQSLPV-PIIADVDLYKYDPWQLPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPIT 136
                       79****************************.88***************8888899************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       sk +++ vg+kk Lvfy g+apkg+kt+W+mheyrl
  PSME_00020754-RA 137 SKgGKKRVGIKKALVFYAGKAPKGSKTNWIMHEYRL 172
                       *966777***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6441198IPR003441NAC domain
PROSITE profilePS5100560.97145198IPR003441NAC domain
PfamPF023651.1E-2646172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
DFVLNGVDGG KQQKKKIGES RLPRKKSVGL SIIMGQRNAE AELELPPGFR FCPTDEELVV  60
HYLCKKGASQ SLPVPIIADV DLYKYDPWQL PEKALFGEKE WYFFTPRDRK YPNGSRPNRA  120
AGSGYWKATG ADKPITSKGG KKRVGIKKAL VFYAGKAPKG SKTNWIMHEY RLGDVSRPAR  180
KKGSLRLDDW VLCRIYNKKS SAEKLALEQN ESSMAVPMEA IDEKEMENQP STSIVHCGIK  240
QNNPSSDLLG QLRPSPTSYN EIPPSASPIN SNINLLNPNF FQNTIPPFTA STLKTSVQNT  300
AFNPVSSSIN HQWTNYNSTD VISVLHTDSS SSRPSSSSEP ISEKEEVQSS FRLENISQEQ  360
QQPFFNFNLE GLDYPFDQIT FSDPYQDYFP SLASSDLPRF YPNDMQFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-87362046174Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R3P91e-165A0A0D6R3P9_ARACU; Uncharacterized protein
STRINGGSMUA_Achr4P02390_0019e-99(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.14e-92NAC family protein