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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00020754-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 408aa MW: 45846.5 Da PI: 8.4102 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.4 | 1.1e-52 | 45 | 172 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrF Ptdeelvv+yL+kk ++++l++ +i++vd+yk++Pw+Lp+k+ +ekewyfF++rd+ky++g+r+nra+ sgyWkatg dk+++ PSME_00020754-RA 45 LPPGFRFCPTDEELVVHYLCKKGASQSLPV-PIIADVDLYKYDPWQLPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPIT 136 79****************************.88***************8888899************************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 sk +++ vg+kk Lvfy g+apkg+kt+W+mheyrl PSME_00020754-RA 137 SKgGKKRVGIKKALVFYAGKAPKGSKTNWIMHEYRL 172 *966777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-64 | 41 | 198 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.971 | 45 | 198 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-26 | 46 | 172 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
DFVLNGVDGG KQQKKKIGES RLPRKKSVGL SIIMGQRNAE AELELPPGFR FCPTDEELVV 60 HYLCKKGASQ SLPVPIIADV DLYKYDPWQL PEKALFGEKE WYFFTPRDRK YPNGSRPNRA 120 AGSGYWKATG ADKPITSKGG KKRVGIKKAL VFYAGKAPKG SKTNWIMHEY RLGDVSRPAR 180 KKGSLRLDDW VLCRIYNKKS SAEKLALEQN ESSMAVPMEA IDEKEMENQP STSIVHCGIK 240 QNNPSSDLLG QLRPSPTSYN EIPPSASPIN SNINLLNPNF FQNTIPPFTA STLKTSVQNT 300 AFNPVSSSIN HQWTNYNSTD VISVLHTDSS SSRPSSSSEP ISEKEEVQSS FRLENISQEQ 360 QQPFFNFNLE GLDYPFDQIT FSDPYQDYFP SLASSDLPRF YPNDMQFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-87 | 36 | 204 | 6 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D6R3P9 | 1e-165 | A0A0D6R3P9_ARACU; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P02390_001 | 9e-99 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 4e-92 | NAC family protein |