PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020394-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 396aa    MW: 43993.5 Da    PI: 7.2862
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020394-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.6e-21143192255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp   + r +r++lg+f+taeeAa+a+++a+ +++g
  PSME_00020394-RA 143 RYRGVRQRR-WGKWAAEIRDP---N-RaARVWLGTFDTAEEAARAYDEAASRFRG 192
                       8*****998.**********8...3.47***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.33E-33142201No hitNo description
SMARTSM003803.1E-35143206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-31143201IPR001471AP2/ERF domain
PROSITE profilePS5103224.882143200IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-22143202IPR016177DNA-binding domain
PfamPF008476.5E-15143192IPR001471AP2/ERF domain
PRINTSPR003671.2E-11144155IPR001471AP2/ERF domain
PRINTSPR003671.2E-11166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MREISGLECR FHDNNYDEPE NEPPCIASST IPVSGSWKHT TRDLLGLQEK RSREGFPWGC  60
SVARNEFDSG NEMGSLWYLN REPIMGFGGD ILAAQGSVNN PDSAKTTYKC QPETSVGHGD  120
EQRMISINEA TDEAAESTKL QKRYRGVRQR RWGKWAAEIR DPNRAARVWL GTFDTAEEAA  180
RAYDEAASRF RGLRAKLNFP HEFMRRDGHA QHCRRPNRAR ESQHLGAAGH SNPITDSSYS  240
IFRLISQHFP GFHLYVQLLQ NPGLSSLALI QQHLAMLLSN PSMQQSVSNT VALAPVASGS  300
ACQDSIPNQP SSQYYRESTV QFHRSETSLS SSYTDSGPAL SIHHSPQQSR LSAIVGGFES  360
HSLYSNVPGS AANEYSQTQP TKGSWTGFNH TPHIAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21142200160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-22ethylene response factor 110