PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00019435-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 740aa    MW: 83088 Da    PI: 7.8412
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00019435-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.4e-20207262156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t++q++eLe +F+++++p+ ++r+eL+++l+L+ rq+k+WFqN+R+++k
  PSME_00019435-RA 207 KKRYHRHTQHQIQELEMFFRECPHPDDKQRQELSRRLSLEPRQIKFWFQNKRTQMK 262
                       688999***********************************************998 PP
2START194.74.3e-613956311206
                       HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
             START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..........dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                       e+a +a++elv++a++ +p+W++      e++ ++e+ + f++++           ++ ea+r++++v+m++ +lve+++d++ qW+  +   
  PSME_00019435-RA 395 EVAVAAMDELVQMAQVCDPLWTTRFedgcEILCQEEYSRLFSRGNLgsssrspygvKTQEASRDTALVIMNSINLVETMMDVN-QWSSVFSci 486
                       68999*****************99999**************99988*************************************.********* PP

                       ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--........-TTSEE-EESSEEEEE CS
             START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.......sssvvRaellpSgili 154
                         +a t+e  s+g      galq+m+ae+q++splvp R+ +fvRy++q+++g w++vdvS+ds + +p        ++s  R++++pSg+li
  PSME_00019435-RA 487 vsRAFTVEIFSTGvagnlnGALQVMYAEFQVPSPLVPtRENYFVRYCKQHSDGIWAVVDVSLDSLRGNPHphphphnTPSTLRCRRRPSGCLI 579
                       ****************************************************************999887777777899************** PP

                       EEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 155 epksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       ++++ng+skvtwvehv++++r++h ++  lv+sg+a+gak+w++tl+rqce+
  PSME_00019435-RA 580 QEMPNGYSKVTWVEHVEVDDRVVHRIYDKLVSSGIAFGAKRWLSTLERQCER 631
                       **************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-21195265IPR009057Homeodomain-like
SuperFamilySSF466892.61E-19196263IPR009057Homeodomain-like
PROSITE profilePS5007117.313204264IPR001356Homeobox domain
SMARTSM003891.8E-18205268IPR001356Homeobox domain
CDDcd000861.25E-17207265No hitNo description
PfamPF000467.5E-18207262IPR001356Homeobox domain
PROSITE patternPS000270239262IPR017970Homeobox, conserved site
PROSITE profilePS5084845.946386634IPR002913START domain
SuperFamilySSF559615.08E-37389633No hitNo description
CDDcd088757.52E-118390630No hitNo description
SMARTSM002345.8E-55395631IPR002913START domain
PfamPF018521.0E-50395631IPR002913START domain
Gene3DG3DSA:3.30.530.201.9E-7502615IPR023393START-like domain
SuperFamilySSF559615.68E-5649724No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MKARERQSEK EELVTVFDLS SFSLFLSGRE HRASEPGGSL LLLHVFQFQN LSFTIISQTV  60
QSETNTETDF SQVSDRQGNI RDLTRCRSDS LGFRICIVSR TKGKIRKMNT GIKIVVKILS  120
GEKGWLGFIR NFYNNIPLGL ATVHNASCDV VLLFSNQPRL VEERQKSQTA EADLEKMREE  180
EFESKSGSEN IEGASGEDQD ADPRSRKKRY HRHTQHQIQE LEMFFRECPH PDDKQRQELS  240
RRLSLEPRQI KFWFQNKRTQ MKAHHERQDN MMLKSENEKL RLDNMRYREA LSSISCPSCG  300
GPATLGEISF DEQQLRIENA KLREEVDRIS GIAAKYVGKP LPSPVTRLNT LPSSTLDLGS  360
GGGSSCLGDF HGTAGGDIVS RHVGLAESEK PMVVEVAVAA MDELVQMAQV CDPLWTTRFE  420
DGCEILCQEE YSRLFSRGNL GSSSRSPYGV KTQEASRDTA LVIMNSINLV ETMMDVNQWS  480
SVFSCIVSRA FTVEIFSTGV AGNLNGALQV MYAEFQVPSP LVPTRENYFV RYCKQHSDGI  540
WAVVDVSLDS LRGNPHPHPH PHNTPSTLRC RRRPSGCLIQ EMPNGYSKVT WVEHVEVDDR  600
VVHRIYDKLV SSGIAFGAKR WLSTLERQCE RLASMLACNI PARDLGVISN PEGRRSMLKL  660
AERMTNSFCA GVSASNAHTW TTLSGSGAED VRVMTRKSID DPGRPPGIVL SAATSFWLPA  720
TPMXCQRSRS WKLCLAFACQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011628991.10.0homeobox-leucine zipper protein ROC2 isoform X1
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLQ9FR590.0Q9FR59_PICAB; Homeobox 1
STRINGERM937490.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]