PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00019232-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 299aa    MW: 34067.3 Da    PI: 6.8012
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00019232-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-11106153655
                       HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        ++Er+RR+++++ f++Lr+llP+       +K + ++ L +Av Y+++L+
  PSME_00019232-RA 106 IIIERQRRKEMKTLFSTLRSLLPEeH---LRGKRTVSDQLLEAVTYVRHLR 153
                       689*********************66...9*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.89100152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-11102171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.81E-10102157No hitNo description
SuperFamilySSF474597.72E-13103172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-8105152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-6106158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
VSKMSIPSSL HSQFLSCNDL MNNFDVENVS SNSNPVLSTQ DPFLSSYNTD HHADIFNFLD  60
GSNSGTPAGL WNRPVLPPFC NSSSPADGQY WNRLPVVAPL DKKNPIIIER QRRKEMKTLF  120
STLRSLLPEE HLRGKRTVSD QLLEAVTYVR HLRQKVQDLS AEREKMKADS HQNAKVSMEK  180
SVDKIPDRNR EYPSLKINSD REYPSLKINS VSSGVQIWTN SLEHEIVYSE ILLALEEGGL  240
EVVSAASSTI NNRVYHTIHT KVVEHDIFNV ETLYHKLWHL IRTKYQTLNE DLQNAEAQA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6773791e-73EF677379.1 Picea sitchensis clone WS02766_M11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNH51e-79B8LNH5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.18e-19bHLH family protein