PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB

Protein Properties

Length: 246aa MW: 28107.6 Da PI: 8.0894

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00018986-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.8	1.4e-09	78	122	4	46
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 W+ ++ +l+ +a + + ++ +W+++a++++ g+t+ +++ ++ + PSME_00018986-RA 78 WSLQLNKLFENALAIYDKDtpdRWEKVAKMLP-GKTAIDVRKHYED 122 ******************************.*********76 PP
2	Myb_DNA-binding	42.2	1.8e-13	186	230	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + +++G+g+W++I+r Rt+ q+ s+ qky PSME_00018986-RA 186 PWTEDEHRQFLLGLHKFGKGDWRSISRNYVVSRTPTQVASHAQKY 230 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-4	31	38	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.24E-10	71	126	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-6	74	126	IPR001005	SANT/Myb domain
Pfam	PF00249	4.7E-7	78	123	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.005	78	124	IPR017877	Myb-like domain
CDD	cd00167	4.02E-5	84	124	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.7E-4	89	124	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.453	179	235	IPR017930	Myb domain
SuperFamily	SSF46689	1.24E-16	180	235	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-18	182	233	IPR006447	Myb domain, plants
SMART	SM00717	3.4E-11	183	233	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-10	183	229	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-11	186	230	IPR001005	SANT/Myb domain
CDD	cd00167	7.77E-9	186	231	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MTDHLPLFLE VRTSGEKLGA PFKYNAGWFK EEKLQLIGKE NWRHIKADSD ESDFKICAMW 60 EMEFPSQETS LSSSGSFWSL QLNKLFENAL AIYDKDTPDR WEKVAKMLPG KTAIDVRKHY 120 EDLVEDGTCI EDGRVALPTY SNSSCTLEWI AEKSGDMHGL KQQFGSGGGK GPSTQPSEQE 180 RKKGVPWTED EHRQFLLGLH KFGKGDWRSI SRNYVVSRTP TQVASHAQKY FIRLSSDNKN 240 KRRSPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-20	70	148	3	81	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT107022	0.0	BT107022.1 Picea glauca clone GQ03101_N16 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006480971.1	2e-72	transcription factor DIVARICATA
Swissprot	Q8S9H7	1e-65	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A067EDJ9	5e-71	A0A067EDJ9_CITSI; Uncharacterized protein
STRING	XP_006480971.1	7e-72	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	9e-64	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]