PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Basic Information? help Back to Top

TF ID

PSME_00018809-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HD-ZIP

Protein Properties

Length: 251aa MW: 28125.8 Da PI: 10.6711

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00018809-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.4	1.4e-19	109	163	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ +f++eq Lee F kn+ p ++++ LA +l+L rqV vWFqNrRa+ k PSME_00018809-RA 109 KKKLRFSREQCALLEESFLKNKAPEPKQKQALALQLNLRPRQVEVWFQNRRARTK 163 78899************************************************98 PP
2	HD-ZIP_I/II	102	4.9e-33	109	198	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+r+s+eq +lLEesF +++ ep++K++la +L+l+prqv+vWFqnrRARtk+kq +d+e Lkr+ ++l+een +L+ke e+Lr +l PSME_00018809-RA 109 KKKLRFSREQCALLEESFLKNKAPEPKQKQALALQLNLRPRQVEVWFQNRRARTKLKQSKVDCELLKRCNESLVEENIKLHKELENLR-AL 198 59*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.265	105	165	IPR001356	Homeobox domain
SMART	SM00389	5.3E-16	107	169	IPR001356	Homeobox domain
CDD	cd00086	4.34E-16	108	166	No hit	No description
SuperFamily	SSF46689	1.37E-18	108	172	IPR009057	Homeodomain-like
Pfam	PF00046	7.4E-17	109	163	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.1E-18	109	168	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	140	163	IPR017970	Homeobox, conserved site
SMART	SM00340	8.9E-16	165	208	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MVSRGGERRT ARSGHRLGLR GKEQAHRGND QSGIYHESFI ENLIKVLTNP IITGTRPGAG 60 GITAACTCVF FQLLKAQPKR PRIAVVVVAI DQRQKLSVLS SVEQEGCPKK KLRFSREQCA 120 LLEESFLKNK APEPKQKQAL ALQLNLRPRQ VEVWFQNRRA RTKLKQSKVD CELLKRCNES 180 LVEENIKLHK ELENLRALKM SSPLTPAATL TMCPSCERVL DADTNSHFTL AKVKSMFMRG 240 SAGHIEFLGI G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	165	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022752662.1	1e-50	homeobox-leucine zipper protein HAT22-like
Swissprot	A2YW03	9e-46	HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
Swissprot	Q6YPD0	9e-46	HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBL	A9NKN4	1e-52	A9NKN4_PICSI; Uncharacterized protein
STRING	ERN10452	2e-49	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	7e-42	homeobox from Arabidopsis thaliana