PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018402-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 396aa    MW: 43918.4 Da    PI: 7.3201
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018402-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.63.7e-172080257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++R+++++eq+++Le+ F + +  p +ee++++ ++l    ++ + +V++WFqNr+ + k+
  PSME_00018402-RA 20 KSRWNPKPEQIQILESIFTSgTVSPGREEIKRIRAQLevfgQVGDVNVFYWFQNRKNRSKR 80
                      89*****************99*************************************997 PP
2Wus_type_Homeobox102.72.4e-331981264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a++RW+P+peQi+iLe++++sG+++P +eei+ri+a+Le +G+++d NVfyWFQNrk R+++k
   PSME_00018402-RA 19 AKSRWNPKPEQIQILESIFTSGTVSPGREEIKRIRAQLEVFGQVGDVNVFYWFQNRKNRSKRK 81
                       689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-121482IPR009057Homeodomain-like
PROSITE profilePS5007111.0781681IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-71783IPR009057Homeodomain-like
SMARTSM003896.3E-61885IPR001356Homeobox domain
PfamPF000465.6E-152080IPR001356Homeobox domain
CDDcd000861.45E-62081No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGELSHNYTL ERESSPPKAK SRWNPKPEQI QILESIFTSG TVSPGREEIK RIRAQLEVFG  60
QVGDVNVFYW FQNRKNRSKR KPRLPAAQRT KARAQSGTQS STSTSRSTSV QTKTIPDISN  120
SPASSMQTNI RNQYRSSAVP ISQVARHHND IQGVYEEMNR ASSVPSQTFT ALLNSPVNPM  180
PNNLENQYSY SSVPVPSFAG HHYDQQVFPS QTFTGLPNNP PNNMHSDVQD QYCSSFTVPV  240
ASSAENLYGQ EKLYKETSNT STFDQSKTIV DVANIQPNPM ENHIADQYLS SSPLAVSSTA  300
GQMTFDQCNT IADVANIRPN PMQSHIPDQY FSSSTIPVSS SAGQIQDLES LFQEMSKTST  360
PVQSQTITDL PNTLPNSMQS NVHAQYGSGE LVRRNE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17682RSKRKPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.17e-30homeobox-3