PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016689-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 813aa    MW: 89043.1 Da    PI: 6.6289
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016689-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.3e-111381048
                      HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      e l +av+ + g++Wk+Ia+ +  gRt+ qc +rwqk+l
  PSME_00016689-RA  1 ETLRRAVQFFKGKNWKKIAESFT-GRTDVQCLHRWQKVL 38
                      6799******************9.************986 PP
2Myb_DNA-binding61.91.3e-194490148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+ Ede++v++v+++G + W++Ia++++ gR +kqc++rw+++l
  PSME_00016689-RA 44 KGPWTKAEDERIVELVNKYGVKKWSAIAKHLP-GRIGKQCRERWHNHL 90
                      79******************************.*************97 PP
3Myb_DNA-binding48.42.1e-1596138145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       +++W+ eE++ l++a++ +G++ W+  a+ ++ gRt++ +k++w+
  PSME_00016689-RA  96 KDAWSLEEELSLIRAHQIYGNK-WAELAKFLP-GRTDNAIKNHWN 138
                       679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.08E-7138No hitNo description
SMARTSM007170.016140IPR001005SANT/Myb domain
PfamPF002491.1E-8138IPR001005SANT/Myb domain
PROSITE profilePS5129413.263138IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-16146IPR009057Homeodomain-like
SuperFamilySSF466893.73E-10248IPR009057Homeodomain-like
PROSITE profilePS5129432.7533994IPR017930Myb domain
SuperFamilySSF466897.49E-3241137IPR009057Homeodomain-like
SMARTSM007174.4E-194392IPR001005SANT/Myb domain
PfamPF002493.3E-184490IPR001005SANT/Myb domain
CDDcd001675.32E-174690No hitNo description
Gene3DG3DSA:1.10.10.601.2E-264793IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-2194145IPR009057Homeodomain-like
PROSITE profilePS5129418.89195145IPR017930Myb domain
SMARTSM007171.5E-1495143IPR001005SANT/Myb domain
PfamPF002497.2E-1496139IPR001005SANT/Myb domain
CDDcd001671.54E-1198138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
ETLRRAVQFF KGKNWKKIAE SFTGRTDVQC LHRWQKVLNP ELVKGPWTKA EDERIVELVN  60
KYGVKKWSAI AKHLPGRIGK QCRERWHNHL NPSINKDAWS LEEELSLIRA HQIYGNKWAE  120
LAKFLPGRTD NAIKNHWNSS IKKKLESYLA SGLVKDFPGL AVLKPTTGSA SSTGGSFNEV  180
QEGAALEEIS ECSQESTSSH CRLSGSFAVP PTSSVQMGHQ ILELQKEACT MNSDNELEIF  240
QEPLLSLGSK TDGFLLLQDG HAGYSNSPIS EAVPRVSSCE INELTESVIT GNSCSVGSPK  300
EVSNTVNVSI SRPSGGLESP GFEPGGSTSA AQDTVSPSAF YTCLLLDSSD MVGIPRSPRA  360
PDFVDSLHPI CPGSSDMMLN SIVSVGDGIC STEMPTSVLN SGICNGAGCV RLASEFQHSD  420
EMLQYCKPSS QDLKIDCQEG RSGPDALTLT FDEKAVSSNV ETTNVQAESP ISECLFYEPP  480
RLPSLDFPFI NCDLINSCNH LQQAYSPLGV RQMIMSSVNC STPYAIWGSH DKSPESFLKS  540
AAKSFRNTPS ILRKRRRESS TPVQSGQRDK KRASAIDYDS CLLHGSLDEK ENSLKDTSNA  600
DFQIAFAEDG VFIPSNENSI IVSPPYCLKT KSIVPGKSKE KQLLYAREGT NYTKVENGCS  660
GDIAVVGSRE SHTRQTVKDE IHRANIQLSF ENVQTGGILV EQDINSPLFS TSGNNSHKTC  720
RMIYSPLTPK TLFGRRSETP AKQTDHKGTL KSMTGIKQSP YIDSPKLCEK KQESKSISLV  780
SSCQTPAVSA SKFSDHIIDQ DWLNVPDLDN LSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-65114515159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-65114515159MYB PROTO-ONCOGENE PROTEIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1552556RKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.21e-84myb domain protein 3r-4