PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

PSME_00015983-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 239aa MW: 26264.5 Da PI: 4.6427

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00015983-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	116.8	2.3e-36	110	179	1	70
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakv 70 ppp aflgpkcalwdc+rpaqgs+w+qdycs+fh ++alneg+pg++p+lrp+gidlkdgllfaal ak+ PSME_00015983-RA 110 PPPKAFLGPKCALWDCPRPAQGSDWCQDYCSNFHGMVALNEGPPGIRPILRPGGIDLKDGLLFAALGAKT 179 89******************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MSNSSSDSEA SLCSSDLSCD MWRLLQLHEE EDDATNILAA PYNSNLQLNE NTLEAANPSS 60 FQEAIPPNEM RKDFYVDHAN AEAQNIDGTN PEVEEEHIPK FQGPCPGISP PPKAFLGPKC 120 ALWDCPRPAQ GSDWCQDYCS NFHGMVALNE GPPGIRPILR PGGIDLKDGL LFAALGAKTM 180 RYLTCLFFKG KLLESGSFLK TNKSFPVLMY GTGSNSHHIS KLDFGDPDRK HELPCGYVL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015576892.1	1e-47	transcription factor VOZ1 isoform X2
Swissprot	Q9SGQ0	3e-42	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A0B2RK91	7e-46	A0A0B2RK91_GLYSO; Transcription factor VOZ1 isoform A
TrEMBL	K7LHU8	7e-46	K7LHU8_SOYBN; Uncharacterized protein
TrEMBL	K7LHV1	5e-46	K7LHV1_SOYBN; Uncharacterized protein
STRING	GLYMA10G07940.3	1e-46	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-31	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]