PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00015336-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 830aa    MW: 90986.4 Da    PI: 7.6777
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00015336-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-08737786147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       r ++T  E e lv+av++lG+g+W+ I  +     k+Rt  ++k++w ++
  PSME_00015336-RA 737 RRPFTVAEVEVLVQAVEKLGTGRWREIKLHAFdhaKHRTYVDLKDKWKTL 786
                       6799***************************99**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.121732791IPR017930Myb domain
SuperFamilySSF466892.57E-16734828IPR009057Homeodomain-like
SMARTSM007175.7E-8736789IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-11737787IPR009057Homeodomain-like
CDDcd116601.38E-17738788No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MEEQKRMEYG FQGYKHPPIP RARRSARGKA GGWLKKKNYV DNGGVCFELL ATVAGQLLQE  60
KETEKTSSEL EGISTTGMRQ KVQDIWKGEE ENSPEQALLD LHNSQHASHS IGASEVTVGN  120
ATQQLGFKDS HYKGFSHENI MSSSVVHRKL TFQDPEVSED AGIPQSIFRT TSILGKSGST  180
DQSPDRKRDL ELLCDSQLPN EGSMVVPPEE GEKSTQSNEK EKECICTDAY GQGNLLRGQS  240
LLHASQDSDS KGKLVKGSMG PLEDHEGKGE NDVNEINSVH WQRKETTHVR TEDAALLDVH  300
PLVSLTRNAE VSTAMGLNSH ELGSSGTNEK GLHCIENKPC DSSIDDPKGM INLFRDDDDN  360
SSDITNPSTV PNISRKALPA KGTKFGRSIS SKYRRIASTR KRNYSKMVVN TDGIVHTGSP  420
GSGLRWKRQR TVRYPPLKRK MLAAGFSPSD INANTSCSVL DVNALDIEQY DSPTKPCSAK  480
SGSIPSPGSA PVSSSPKSVK LGIKSFAVPE LFIEVPESAT VANLKASFFP LLFISPQPFW  540
GFKNCPEEAK LKAATEAVIN LLEGGFQIRV LLQGMKVTDD SASLIQEGTS HPEKLETVGF  600
MLEPNSIPSS STGADNPLFM LSHAASRTSS THPKASCSGT SIDIEVNKGL IDGSCSETNG  660
MFSADVAQMA GCQTQDINQW VMGESDLIIG SSHPQAVSYS GALVVHPSVV EDSKQGLTLV  720
PMRHRSRRAD IGKRRLRRPF TVAEVEVLVQ AVEKLGTGRW REIKLHAFDH AKHRTYVDLK  780
DKWKTLVHTA TIAPHQRRGE PVPLELLDRV IRAHSYWTKR QTNQMLNHSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-467218241104Telomere binding protein TBP1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1146240.0BT114624.1 Picea glauca clone GQ03518_A12 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.17e-58TRF-like 2