PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

PSME_00014997-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 614aa MW: 69377.3 Da PI: 5.6513

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00014997-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	405.7	9.6e-125	350	566	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgpkcalwdc+rpaqg++w+qdycs fh tla neg+pg++pvlrp+gidlkdg+lfaalsak+q k vgipecegaatakspwna PSME_00014997-RA 350 PPPAAFLGPKCALWDCSRPAQGTKWCQDYCSDFHMTLASNEGAPGMRPVLRPEGIDLKDGPLFAALSAKTQEKAVGIPECEGAATAKSPWNAY 442 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rew+ffdk +r fesgn+kqrslpdysgrgwhesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+alyrle PSME_00014997-RA 443 ELFDMYVLEGESMREWFFFDKLQRDFESGNQKQRSLPDYSGRGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDACALYRLE 535 ***************************************************************************************** PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+v +kk++kgkv d+l+dlq++lg+l+a PSME_00014997-RA 536 LKMVYSKKNTKGKVGGDPLVDLQHQLGKLSA 566 ***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.70.330	4.0E-4	168	198	IPR012677	Nucleotide-binding alpha-beta plait domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence Send to blast
MRNCSWEFIR ENSMVYRRYF IRNSMSWKSS DRVCEEGTIG KCPDIVAEIP YRECGFKESL 60 QKGGKRDGSS SMDSIFVQMG SDRRYFHGLT RSDVPISKVP FSVVPVFATG SHFPTFGSVP 120 MGYETESFTG TGSLSGSLYI DRRRIEVLKS PILYVDSRPG LLFEYDNYVD YHMGAESGYV 180 RFEQPEMVQK PRAAAVVSKI VEACRFDEFT DIVVVTRHGI KDKKVVGTMS EAYPHIIIHI 240 FSTKDFLVDD LHTPEKYFER VSRCTNIGEG LHQNSYPQTS EQLPANIEHQ ENNNYVQTSE 300 QLPPNLVEGL EVTSGLEGGQ INFHQDYIPA AQPIFTLTGE EETSPPGLCP PPAAFLGPKC 360 ALWDCSRPAQ GTKWCQDYCS DFHMTLASNE GAPGMRPVLR PEGIDLKDGP LFAALSAKTQ 420 EKAVGIPECE GAATAKSPWN AYELFDMYVL EGESMREWFF FDKLQRDFES GNQKQRSLPD 480 YSGRGWHESR KQVIKDFGGL KRSYYMDPQP STQFEWHLYE YEINDCDACA LYRLELKMVY 540 SKKNTKGKVG GDPLVDLQHQ LGKLSAEFSW NGSNYTYSAS TQVAPIGKNL LMGHECSMVI 600 LSKKQVDAMQ LNDK

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence Send to blast

MRNCSWEFIR ENSMVYRRYF IRNSMSWKSS DRVCEEGTIG KCPDIVAEIP YRECGFKESL  60
QKGGKRDGSS SMDSIFVQMG SDRRYFHGLT RSDVPISKVP FSVVPVFATG SHFPTFGSVP  120
MGYETESFTG TGSLSGSLYI DRRRIEVLKS PILYVDSRPG LLFEYDNYVD YHMGAESGYV  180
RFEQPEMVQK PRAAAVVSKI VEACRFDEFT DIVVVTRHGI KDKKVVGTMS EAYPHIIIHI  240
FSTKDFLVDD LHTPEKYFER VSRCTNIGEG LHQNSYPQTS EQLPANIEHQ ENNNYVQTSE  300
QLPPNLVEGL EVTSGLEGGQ INFHQDYIPA AQPIFTLTGE EETSPPGLCP PPAAFLGPKC  360
ALWDCSRPAQ GTKWCQDYCS DFHMTLASNE GAPGMRPVLR PEGIDLKDGP LFAALSAKTQ  420
EKAVGIPECE GAATAKSPWN AYELFDMYVL EGESMREWFF FDKLQRDFES GNQKQRSLPD  480
YSGRGWHESR KQVIKDFGGL KRSYYMDPQP STQFEWHLYE YEINDCDACA LYRLELKMVY  540
SKKNTKGKVG GDPLVDLQHQ LGKLSAEFSW NGSNYTYSAS TQVAPIGKNL LMGHECSMVI  600
LSKKQVDAMQ LNDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-121	vascular plant one zinc finger protein