PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014660-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 270aa    MW: 30715 Da    PI: 6.3694
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014660-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-1060103755
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         Er+RR+++N+ + +Lr+++Pk +      K++K +i   A+ Y+ +Lq
  PSME_00014660-RA  60 HTERKRRKKMNDTLYTLRSVVPKiS------KMDKQSIIGDAISYVLDLQ 103
                       57*********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.27853102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-1055107No hitNo description
SuperFamilySSF474592.09E-1557120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-1059108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-860103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1361116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDTQLQYGSG FEDQNNKLWM DNMDEIAGQL DWDDSDPEIM AESKPATKTN YLQVQSKNLH  60
TERKRRKKMN DTLYTLRSVV PKISKMDKQS IIGDAISYVL DLQNMIREIE DEIDGLICSS  120
NKGDHTQSTP QTINSLTNSN YALGKRSIES GDRKKSVDKL KHGKVLQVEI CNAGEGGIYH  180
VRIEGKKETG GLVKVTRAME SLPWQIMNSN ICRFDDVIHY SLIVNVSIYL NFYMDRILKI  240
TNINVKSLGN IGTEKLEDMI RKIITSDCLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1068130.0BT106813.1 Picea glauca clone GQ03011_B21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRN61e-148B8LRN6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.23e-24bHLH family protein