PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

PSME_00013916-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 395aa MW: 43872.8 Da PI: 7.6508

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00013916-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.5e-12	208	257	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+ h Er+RR+ +N+ +++ r++lP + K +K++i+ ++++YI++Lq PSME_00013916-RA 208 REIHILSERQRRSGMNQLLSKMRSILPDQ----TVKRDKISIVAETINYIHYLQ 257 7789999*******************8....69****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.65E-12	205	261	No hit	No description
PROSITE profile	PS50888	13.649	206	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.03E-14	206	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-12	207	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.3E-10	208	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.8E-10	212	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MRPGPPITLA ASLDYSEAHT PKMHFQVGAT NSEIPPLGIG RRRQAVDYRM PIQHLMGALN 60 QPSSSSQFFN QSGAHGAGSE RETLIKFPPI EVAEMDDLSA VVTKCTNPTN VFADQLYPYP 120 GLNPRSGCRS VNSIPDICLV QDSIDCDNNE RAHCMHHKIG AKAIQPIPQF HSNERRYDVQ 180 DTDQDFKYTS LKKHRCSGPG TSDGVSEREI HILSERQRRS GMNQLLSKMR SILPDQTVKR 240 DKISIVAETI NYIHYLQQRL HTRCKKLPPC GAEYTAGSSH QTGPSAADTT LSTTSSSDNA 300 VLMPEISLKS HADKELFITI TCAKKGNLLP SIILVMEEHN LEVMDAFVST NDRVAFHSLH 360 LKVLQTLDAA GRKALTDTLH MLIKSEHQTS LEKRD

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MRPGPPITLA ASLDYSEAHT PKMHFQVGAT NSEIPPLGIG RRRQAVDYRM PIQHLMGALN  60
QPSSSSQFFN QSGAHGAGSE RETLIKFPPI EVAEMDDLSA VVTKCTNPTN VFADQLYPYP  120
GLNPRSGCRS VNSIPDICLV QDSIDCDNNE RAHCMHHKIG AKAIQPIPQF HSNERRYDVQ  180
DTDQDFKYTS LKKHRCSGPG TSDGVSEREI HILSERQRRS GMNQLLSKMR SILPDQTVKR  240
DKISIVAETI NYIHYLQQRL HTRCKKLPPC GAEYTAGSSH QTGPSAADTT LSTTSSSDNA  300
VLMPEISLKS HADKELFITI TCAKKGNLLP SIILVMEEHN LEVMDAFVST NDRVAFHSLH  360
LKVLQTLDAA GRKALTDTLH MLIKSEHQTS LEKRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D5ABF7	1e-163	D5ABF7_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.2	1e-10	bHLH family protein