PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00011446-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GRAS
Protein Properties Length: 438aa    MW: 49897.5 Da    PI: 8.6372
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00011446-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS259.21.4e-797132474326
              GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                        +e l+a++lf  + P+ k+ h++aN+++l  +e+++r+Hi+Df+i +G++Wp+L+q L + p+gpp+l iTg++ p++    +e++ee ++r
  PSME_00011446-RA  71 AAEILKAYQLFIVAIPYTKIYHFLANRTVLIVTEKSHRLHIVDFGILYGFKWPSLIQCLVNHPGGPPMLHITGIDFPQPRfgATERIEEARRR 163
                       67899*************************************************************************9999*********** PP

              GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                       L+++A+++gvpfe+++ +a ++++l++eeL++ ++E+l+Vn++++  +llde+v les+++ vL+ ++s++P+v+++   +  +n++ F +rf
  PSME_00011446-RA 164 LEDYAKSFGVPFEYHA-IAAEWKNLDVEELSLLNDEVLVVNCMYRSINLLDETVVLESPKNIVLNKIRSMNPRVFIHGVVNGAYNAPFFITRF 255
                       ****************.799************************************************************************* PP

              GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                        eal +ysa fd++e+ +p+e+ +r  +E+el+++ei nvvaceg er++r et+++W+ r+++aGF +
  PSME_00011446-RA 256 REALFHYSASFDAMETIVPQEHPQRLLLEKELFSQEILNVVACEGLERVKRPETYKQWQVRIQRAGFVQ 324
                       *******************************************************************75 PP
2GRAS54.81.9e-17324402281359
              GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                       +r  +E+el+++ei nvvaceg er++r et+++W+ r+++aGF ++pl+ ++ ++ + +++ +  + + v+e++   +
  PSME_00011446-RA 324 QRLLLEKELFSQEILNVVACEGLERVKRPETYKQWQGRIQRAGFVQLPLDRTIFSKSRNMVKSFFHKDFGVDEDDMKGY 402
                       68899***********************************************************9888****9987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.761397IPR005202Transcription factor GRAS
PfamPF035144.9E-7771324IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MGQGLGVGEF EEAIQVVPKR NIGLGVENGC HFRAPKKESD PDPNLQVGKR EYAIGSGGRL  60
FTKLSSGLAS AAEILKAYQL FIVAIPYTKI YHFLANRTVL IVTEKSHRLH IVDFGILYGF  120
KWPSLIQCLV NHPGGPPMLH ITGIDFPQPR FGATERIEEA RRRLEDYAKS FGVPFEYHAI  180
AAEWKNLDVE ELSLLNDEVL VVNCMYRSIN LLDETVVLES PKNIVLNKIR SMNPRVFIHG  240
VVNGAYNAPF FITRFREALF HYSASFDAME TIVPQEHPQR LLLEKELFSQ EILNVVACEG  300
LERVKRPETY KQWQVRIQRA GFVQRLLLEK ELFSQEILNV VACEGLERVK RPETYKQWQG  360
RIQRAGFVQL PLDRTIFSKS RNMVKSFFHK DFGVDEDDMK GYLFASMGSR QQFKTGFFAV  420
RTNSPVYYGL PATSAEAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-337332294329Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256895.11e-123PREDICTED: scarecrow-like protein 9
RefseqXP_010262535.11e-123PREDICTED: scarecrow-like protein 14
TrEMBLA3E2G21e-152A3E2G2_PINRA; SCARECROW-like protein 1
STRINGXP_010256894.11e-122(Nelumbo nucifera)
STRINGXP_010262535.11e-122(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-104GRAS family protein