PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00011444-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GRAS
Protein Properties Length: 270aa    MW: 31166.3 Da    PI: 4.5515
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00011444-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS111.21.4e-34148266203321
              GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                       a+++v +  +llde+v les+r+ vL+ ++s++P+v+++   + ++n++ F +rf eal +ysalfd++e+ +pre+ +ri +E+el+gr+i 
  PSME_00011444-RA 148 AIHVVPKFNNLLDETVVLESPRNIVLNNIRSMNPRVFIHGVVNGEYNAPFFITRFREALFHYSALFDAMETIVPREHPNRILLEKELFGRKIL 240
                       78999999************************************************************************************* PP

              GRAS 296 nvvacegaerrerhetlekWrerlee 321
                       nvvac+g er+er et+++W++ +++
  PSME_00011444-RA 241 NVVACKGLERVERPETYKQWQANMSM 266
                       ***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.1111270IPR005202Transcription factor GRAS
PfamPF035144.9E-32148266IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MWLLITISDG ESKDTVLYSD IVLKYISDMH MDENMEEKKC MYQECSALQA TVKPFYDILS  60
ENYPPQGLCN NNTIGENQKI EESSWIGEFF NYQMPGGFES PLFTNISSVY SSQDSFSSSG  120
SSPIYELSLF EFFSESKQGL GVGEFEEAIH VVPKFNNLLD ETVVLESPRN IVLNNIRSMN  180
PRVFIHGVVN GEYNAPFFIT RFREALFHYS ALFDAMETIV PREHPNRILL EKELFGRKIL  240
NVVACKGLER VERPETYKQW QANMSMFWSR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6835673e-58DQ683567.1 Pinus radiata SCARECROW-like protein 1 (SCL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA3E2G27e-58A3E2G2_PINRA; SCARECROW-like protein 1
STRINGAquca_009_00954.17e-50(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.12e-46GRAS family protein