PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009984-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 275aa    MW: 31633.4 Da    PI: 6.8662
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009984-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.15.5e-43211462128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        pGfrF Pt+eelv +yLkk v+g + + ++  i+++d+y+++Pw+Lp  ++ +e +w fF++r +k+    r+nr+t sgyWkatg d++v 
  PSME_00009984-RA  21 LPGFRFYPTEEELVGFYLKKTVQGGQQPQFDRiIPTLDLYRYDPWELPGLASVGEMQWLFFVPRCHKKC--ARPNRMTVSGYWKATGADRTVR 111
                       59*********************9996655544***************77778999*******999865..7********************* PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +   + +g kktLvfykg++p+g+ktdW+m+eyr+
  PSME_00009984-RA 112 NDLLQCIGQKKTLVFYKGKNPRGQKTDWIMNEYRM 146
                       *99999***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-4619168IPR003441NAC domain
PROSITE profilePS5100550.29420168IPR003441NAC domain
PfamPF023651.7E-2222146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAVQLEETYT DDTPQRDLMS LPGFRFYPTE EELVGFYLKK TVQGGQQPQF DRIIPTLDLY  60
RYDPWELPGL ASVGEMQWLF FVPRCHKKCA RPNRMTVSGY WKATGADRTV RNDLLQCIGQ  120
KKTLVFYKGK NPRGQKTDWI MNEYRMPDMS LSAPKKKMDL VLCRIYRKAV TQKSMEQLVK  180
PHHLEREEPV VTDMSIEQRV NSDEVEKKEP VISGDEGKSH SILDSVSCHS NPLVSLHHGV  240
VCSSLSEASD EARIFEGLVP IIFYEEIMEL KTPKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-402216819165NO APICAL MERISTEM PROTEIN
1ut4_B2e-402216819165NO APICAL MERISTEM PROTEIN
1ut7_A2e-402216819165NO APICAL MERISTEM PROTEIN
1ut7_B2e-402216819165NO APICAL MERISTEM PROTEIN
4dul_A2e-402216819165NAC domain-containing protein 19
4dul_B2e-402216819165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791987.13e-62NAC domain-containing protein 22-like
SwissprotQ10S653e-56NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A075M5N55e-92A0A075M5N5_9SPER; NAC domain protein
STRINGPavir.Db00028.1.p3e-61(Panicum virgatum)
STRINGXP_008791987.11e-61(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.14e-56NAC domain containing protein 35
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]