PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009899-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 308aa    MW: 35253.3 Da    PI: 6.9091
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009899-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.81.6e-43191463128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       pGfrF Pt+eel+ +yLkk+++  + l+++++i+++d+y+++Pw+Lp  +++a ++++w+fF++rd+k++   r+nr t sgyWkatg+d++v
  PSME_00009899-RA  19 PGFRFYPTEEELLGFYLKKRIQPGHgLNFDKIIPTLDLYQYDPWELPgLAHDAgDQQQWFFFVPRDRKKS-CPRPNRLTVSGYWKATGSDRAV 110
                       9********************98887999889***************5444442566**********986.58******************** PP

               NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++ + +glkk+Lvfykg+ap+g++tdW+m eyr+
  PSME_00009899-RA 111 RNERLQCIGLKKILVFYKGKAPRGQRTDWIMMEYRM 146
                       **999*****************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-4613168IPR003441NAC domain
PROSITE profilePS5100550.40217168IPR003441NAC domain
PfamPF023652.1E-2219146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MPDKIWSNRV VKEELMDLPG FRFYPTEEEL LGFYLKKRIQ PGHGLNFDKI IPTLDLYQYD  60
PWELPGLAHD AGDQQQWFFF VPRDRKKSCP RPNRLTVSGY WKATGSDRAV RNERLQCIGL  120
KKILVFYKGK APRGQRTDWI MMEYRMPDLS SSATKKKIDM VLCRIYRKAA ARKSLEQRTR  180
PNDADKEEPV VSSDEDEEKS ALNVSSQSNP MTEAAKVSSL SYLDHDDVCS SLSKKEDESS  240
IFDNLEPIMF CEDQETSVLK TPESCKPPQL ELPKLSMDFL FSQRIATPNA LLATPSPLQI  300
PHSSIPGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-421917119168NO APICAL MERISTEM PROTEIN
1ut4_B9e-421917119168NO APICAL MERISTEM PROTEIN
1ut7_A9e-421917119168NO APICAL MERISTEM PROTEIN
1ut7_B9e-421917119168NO APICAL MERISTEM PROTEIN
3swm_A1e-411917122171NAC domain-containing protein 19
3swm_B1e-411917122171NAC domain-containing protein 19
3swm_C1e-411917122171NAC domain-containing protein 19
3swm_D1e-411917122171NAC domain-containing protein 19
3swp_A1e-411917122171NAC domain-containing protein 19
3swp_B1e-411917122171NAC domain-containing protein 19
3swp_C1e-411917122171NAC domain-containing protein 19
3swp_D1e-411917122171NAC domain-containing protein 19
4dul_A9e-421917119168NAC domain-containing protein 19
4dul_B9e-421917119168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ10S652e-57NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A075M5N51e-118A0A075M5N5_9SPER; NAC domain protein
STRINGGSMUA_Achr11P01320_0013e-60(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.15e-55NAC domain containing protein 35
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]