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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00009427-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | ZF-HD | ||||||||
Protein Properties | Length: 288aa MW: 31531.8 Da PI: 8.0519 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.7 | 2.5e-32 | 72 | 127 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrY+eClkNhAas+Ggha+DGCg+fmps ge+g+ +al+CaAC+CHRnFHRreve PSME_00009427-RA 72 CVRYRECLKNHAASIGGHAIDGCGDFMPS-GEDGSLEALRCAACNCHRNFHRREVEG 127 68**************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 8.0E-23 | 66 | 131 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.8E-29 | 73 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.2E-31 | 74 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 28.227 | 75 | 124 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.29E-17 | 205 | 271 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-29 | 209 | 272 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.2E-26 | 214 | 270 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MELGEHDSDM GGMALPMLYA GPAPNIHESS KMKPGENGTA GTGTPSGETR PPDHELLQHE 60 HHQQPSVVVK KCVRYRECLK NHAASIGGHA IDGCGDFMPS GEDGSLEALR CAACNCHRNF 120 HRREVEGEPP CYYCYSPRSC GARKRGAGPP MALLGPPSQQ QHPINATPLA LPPTSAHVVA 180 RSLMQGDNDQ DGSSGMSYLN AYGSGSGMMP IVMKKRFRTK FSNEQKEKMC AFAEKVGWRI 240 QKHDDAAVHQ FCMDVGVKRH VLKVWMHNNK SHMLAAKAQR SEEQCTSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-27 | 215 | 271 | 18 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ132851 | 1e-48 | FJ132851.2 Pinus taeda isolate 6678 anonymous locus CL2348Contig1_01 genomic sequence. | |||
GenBank | FJ132855 | 1e-48 | FJ132855.2 Pinus taeda isolate 6682 anonymous locus CL2348Contig1_01 genomic sequence. | |||
GenBank | FJ132856 | 1e-48 | FJ132856.2 Pinus taeda isolate 6675 anonymous locus CL2348Contig1_01 genomic sequence. | |||
GenBank | FJ132857 | 1e-48 | FJ132857.2 Pinus taeda isolate 6683 anonymous locus CL2348Contig1_01 genomic sequence. | |||
GenBank | FJ132859 | 1e-48 | FJ132859.2 Pinus taeda isolate 6681 anonymous locus CL2348Contig1_01 genomic sequence. | |||
GenBank | FJ132861 | 1e-48 | FJ132861.2 Pinus taeda isolate 6684 anonymous locus CL2348Contig1_01 genomic sequence. | |||
GenBank | FJ132863 | 1e-48 | FJ132863.2 Pinus taeda isolate 6688 anonymous locus CL2348Contig1_01 genomic sequence. | |||
GenBank | JQ263835 | 1e-48 | JQ263835.1 Pinus radiata isolate 6690 hypothetical protein (CL2348Contig1_01) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024402412.1 | 4e-71 | zinc-finger homeodomain protein 1-like | ||||
Swissprot | A2Z259 | 2e-59 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A0D6R164 | 1e-111 | A0A0D6R164_ARACU; Uncharacterized protein | ||||
STRING | PP1S3_539V6.1 | 2e-70 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 8e-60 | homeobox protein 31 |