PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

PSME_00009360-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB

Protein Properties

Length: 318aa MW: 36090.7 Da PI: 6.5126

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00009360-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.8	7.8e-11	18	61	5	48
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T+ Ed +l ++++++G g W+ +++ g+ R++k+ck+rw++yl PSME_00009360-RA 18 TAKEDMILSNYIRLHGDGGWRNLPQKAGLMRCGKSCKLRWLNYL 61 899***************************************97 PP
2	Myb_DNA-binding	53.4	6e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l PSME_00009360-RA 67 RGNISPDEEELIIRLHRLLGNR-WALIAGRLP-GRTDNEIKNYWNTHL 112 7899****************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.882	9	61	IPR017930	Myb domain
SMART	SM00717	5.3E-5	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.4E-24	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	4.4E-9	18	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-18	18	68	IPR009057	Homeodomain-like
CDD	cd00167	5.18E-6	18	61	No hit	No description
PROSITE profile	PS51294	25.752	62	116	IPR017930	Myb domain
SMART	SM00717	2.1E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-15	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-25	69	116	IPR009057	Homeodomain-like
CDD	cd00167	3.16E-12	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MGRSPCSSKH GLKRGASTAK EDMILSNYIR LHGDGGWRNL PQKAGLMRCG KSCKLRWLNY 60 LRPDIKRGNI SPDEEELIIR LHRLLGNRWA LIAGRLPGRT DNEIKNYWNT HLTKKMLSIT 120 QSLENLKNMP ESASLKNYVF ETTPVRIEMA VREPEMVGIK VSKGYDCSYL SSDNAKSLHG 180 KETVNSPRSS SDLLVNDAIV TSEGSPHFDY LAGIPESLFN FNELPSPDSN LLPCQSDSGL 240 EVFCREPVPF ATETNEFYVG YSDKSNVQSV KSFTDADGHV MEDYFDNTQQ VDWIHELGWL 300 LWESQEERER KFQFKGCG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-20	12	116	5	108	B-MYB
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:18541146, ECO:0000269\|PubMed:9839469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022715268.1	1e-67	transcription repressor MYB6-like
Swissprot	Q9S9K9	2e-57	MYB3_ARATH; Transcription factor MYB3
TrEMBL	A0A167V911	1e-112	A0A167V911_PICAB; Transcription factor MYB31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	3e-51	myb domain protein 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Wada T,Hayashi N,Tominaga-Wada R Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1089372 [PMID:26339713] Wada T,Tominaga-Wada R CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression. Plant Sci., 2015. 241: p. 260-5 [PMID:26706076] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]