PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008680-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 476aa    MW: 53403.4 Da    PI: 7.814
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008680-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.6e-1669116148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+W++eEd ll + ++ +G g+W++ +++ g++R++k+c++rw++yl
  PSME_00008680-RA  69 KGAWSAEEDSLLGKFIQTHGEGNWRSLPKKAGLRRCGKSCRLRWLNYL 116
                       79********************************************97 PP
2Myb_DNA-binding49.41e-15122166147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ Tt+E+el+++ +++lG++ W+ Ia +++ gRt++++k++w++ 
  PSME_00008680-RA 122 RGNITTDEEELIIRMHALLGNR-WSIIAGRVP-GRTDNEIKNYWNTN 166
                       7999******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.37864116IPR017930Myb domain
SuperFamilySSF466897.65E-2866163IPR009057Homeodomain-like
SMARTSM007171.9E-1268118IPR001005SANT/Myb domain
PfamPF002492.2E-1469116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2270123IPR009057Homeodomain-like
CDDcd001671.63E-971116No hitNo description
PROSITE profilePS5129424.723117171IPR017930Myb domain
SMARTSM007175.1E-15121169IPR001005SANT/Myb domain
PfamPF002491.0E-13122167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-23124171IPR009057Homeodomain-like
CDDcd001671.43E-10126167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MAAESHRKRG LLPARSLSIG QFHHQQARIA SSGYVSSAFQ LASPCSRVSH SRKLEMGRAP  60
CCSKVGLNKG AWSAEEDSLL GKFIQTHGEG NWRSLPKKAG LRRCGKSCRL RWLNYLRPSI  120
KRGNITTDEE ELIIRMHALL GNRWSIIAGR VPGRTDNEIK NYWNTNLSKK LAVRGIDPKT  180
HKKITTTDSI NNRVSDLFNQ RKLGEKQYDS SQRSQQLERN ATRAGQSTVL VIPNVHNLKA  240
DLKGQYLAGP RDQTKGSNMI RSCSAINKPI IEPNSNELTA AADSIFRCSS ASDKSSKSIH  300
PDFIQPQPVV SSDTAGKKTD DSTVYCSSDS AAGSCCLIDH RYLSLEENSN ERYSDTPAEE  360
CTGSLSISNP YTHSYSEAAI CDSREHINAC HAQKHDQFHE YDIFSLFDVR NAENEICCND  420
DQWVQEQGAE YMQKDQDLPQ LHGWDKQIED PEKEHFGSNV VNNDVTTMSW DSSFWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-236717125128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankPMU394480.0U39448.1 Picea mariana MYB-like transcriptional factor MBF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ409200.0Q40920_PICMA; MYB-like transcriptional factor MBF1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-65myb domain protein 6