PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00007620-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 289aa    MW: 31147 Da    PI: 10.3904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00007620-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.4e-11190235555
                       HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       h+++Er+RR+ri +++  L+el+P  +      K +Ka++L + ++Y+k Lq
  PSME_00007620-RA 190 HSIAERQRRERIAERMKALQELVPIfN------KSDKAAMLDEIIDYVKFLQ 235
                       99***********************55......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-16183244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.666185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-12189239No hitNo description
Gene3DG3DSA:4.10.280.101.1E-15189243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-8190235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
SSSALENRRP GYDDWHFGRS IFGFQASTAT DRVRAQDPWH YSWAQHGDAS LSQLLAGTGG  60
PGLLAVIRSP LSGSAVAATA KDTITIQSPT QSWRPPYVGL NPLSLGQGRV DTARLLGKRL  120
RDDQARPTNT GLFTNFGVAV GSNNEQAGQQ STYELALAQP QPQSLSPPGA VAAPARPRAR  180
ARRGQATDPH SIAERQRRER IAERMKALQE LVPIFNKSDK AAMLDEIIDY VKFLQLQVKV  240
LSMSRLGGAG AGGPLVADIS ADASNSMRLS RIKKGHENIC RDDEGLSIT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194199RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325140.21e-44transcription factor bHLH66
STRINGPOPTR_0018s11800.15e-44(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.14e-22LJRHL1-like 3